Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Sign in
Toggle navigation
Menu
Open sidebar
custom
Fiumara_BasePrimeEd2022
Fiumara_BasePrimeEd2022_BARseq
Commits
cdf0a1b7
Commit
cdf0a1b7
authored
Jul 25, 2023
by
Stefano Beretta
Browse files
Update README.md
parent
7c76b6a3
Changes
1
Show whitespace changes
Inline
Side-by-side
README.md
View file @
cdf0a1b7
...
...
@@ -9,7 +9,7 @@ _Nature Biotechnology_ 2023.
### Analyses ###
Sequencing data were analyzed with the
[
BAR-Seq2
](
https://bitbucket.org/bereste/bar-seq2
)
pipeline, with the following parameters:
Sequencing data were analyzed with the
[
_
BAR-Seq2
_
](
https://bitbucket.org/bereste/bar-seq2
)
pipeline, with the following parameters:
-
`--trim-sequences --trim-opt '-m 50 -q 30'`
to trim low-quality bases and keeping sequences having length >50bp;
-
`--edit-distance 2`
;
-
`--min-count 2`
to keep only barcodes having minimum count equal to 2.
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment