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Commit a2c9b5de authored by Matteo Barcella's avatar Matteo Barcella
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Update AF_comparison.R

parent 294c2e0c
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WES/AF_comparison.R
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...@@ -12,7 +12,7 @@ for (mysample in c("12_27_1","12_27_2", "10_395_3", "10_395_4")) { ...@@ -12,7 +12,7 @@ for (mysample in c("12_27_1","12_27_2", "10_395_3", "10_395_4")) {
inputdata[["passonly"]][[mysample]] <- filter_variants_v3(infile = paste0(mysample, "_dbsnp_cc_cnc_dbnsfp_refseq_light.fields.txt"), sampleid = mysample, dp = 50) inputdata[["passonly"]][[mysample]] <- filter_variants_v3(infile = paste0(mysample, "_dbsnp_cc_cnc_dbnsfp_refseq_light.fields.txt"), sampleid = mysample, dp = 50)
} }
source(file = "/home/mbarcella/scripts/bitbucket/exometools/Compare_variants_AF_v3.R") source(file = "Compare_variants_AF_v3.R")
Comparison_12_27 <- list() Comparison_12_27 <- list()
Comparison_10_395 <- list() Comparison_10_395 <- list()
......
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