sessionInfo.txt

R version 4.1.3 (2022-03-10)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

Matrix products: default
BLAS/LAPACK: singlecell4/lib/libopenblasp-r0.3.20.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8       
 [4] LC_COLLATE=en_US.UTF-8     LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] ggalluvial_0.12.5         stringr_1.5.0             circlize_0.4.15           ComplexHeatmap_2.10.0    
 [5] RColorBrewer_1.1-3        scales_1.2.0              reshape2_1.4.4            gridExtra_2.3            
 [9] ggplot2_3.4.2             viridis_0.6.2             viridisLite_0.4.0         dplyr_1.1.2              
[13] clusterProfiler_4.7.1.002 sp_1.4-7                  SeuratObject_4.1.0        Seurat_4.1.1             

loaded via a namespace (and not attached):
  [1] utf8_1.2.2             reticulate_1.25        tidyselect_1.2.0       RSQLite_2.2.14        
  [5] AnnotationDbi_1.56.2   htmlwidgets_1.5.4      BiocParallel_1.28.3    Rtsne_0.16            
  [9] scatterpie_0.1.7       munsell_0.5.0          codetools_0.2-18       ica_1.0-2             
 [13] future_1.25.0          miniUI_0.1.1.1         withr_2.5.0            spatstat.random_2.2-0 
 [17] colorspace_2.0-3       GOSemSim_2.24.0        progressr_0.10.0       Biobase_2.54.0        
 [21] knitr_1.39             rstudioapi_0.13        stats4_4.1.3           ROCR_1.0-11           
 [25] tensor_1.5             DOSE_3.24.2            listenv_0.8.0          GenomeInfoDbData_1.2.7
 [29] polyclip_1.10-0        bit64_4.0.5            farver_2.1.0           downloader_0.4        
 [33] parallelly_1.31.1      vctrs_0.6.3            treeio_1.18.1          generics_0.1.2        
 [37] gson_0.1.0             xfun_0.31              R6_2.5.1               doParallel_1.0.17     
 [41] GenomeInfoDb_1.30.1    clue_0.3-60            graphlayouts_0.8.0     bitops_1.0-7          
 [45] spatstat.utils_2.3-1   cachem_1.0.6           fgsea_1.20.0           gridGraphics_0.5-1    
 [49] promises_1.2.0.1       ggraph_2.0.5           enrichplot_1.14.2      rgeos_0.5-9           
 [53] gtable_0.3.0           globals_0.15.0         goftest_1.2-3          tidygraph_1.2.1       
 [57] rlang_1.1.1            GlobalOptions_0.1.2    splines_4.1.3          lazyeval_0.2.2        
 [61] spatstat.geom_2.4-0    yaml_2.3.5             abind_1.4-5            httpuv_1.6.5          
 [65] qvalue_2.26.0          tools_4.1.3            ggplotify_0.1.0        ellipsis_0.3.2        
 [69] spatstat.core_2.4-4    BiocGenerics_0.40.0    ggridges_0.5.3         Rcpp_1.0.8.3          
 [73] plyr_1.8.7             zlibbioc_1.40.0        purrr_1.0.1            RCurl_1.98-1.6        
 [77] rpart_4.1.16           deldir_1.0-6           GetoptLong_1.0.5       pbapply_1.5-0         
 [81] cowplot_1.1.1          S4Vectors_0.34.0       zoo_1.8-10             ggrepel_0.9.3         
 [85] cluster_2.1.3          magrittr_2.0.3         data.table_1.14.2      scattermore_0.8       
 [89] lmtest_0.9-40          RANN_2.6.1             fitdistrplus_1.1-8     matrixStats_0.62.0    
 [93] patchwork_1.1.1        mime_0.12              evaluate_0.15          xtable_1.8-4          
 [97] HDO.db_0.99.1          shape_1.4.6            IRanges_2.28.0         compiler_4.1.3        
[101] tibble_3.2.1           KernSmooth_2.23-20     crayon_1.5.1           shadowtext_0.1.2      
[105] htmltools_0.5.2        ggfun_0.0.6            mgcv_1.8-40            later_1.3.0           
[109] tidyr_1.3.0            aplot_0.1.4            DBI_1.1.2              tweenr_1.0.2          
[113] MASS_7.3-57            Matrix_1.5-4.1         cli_3.6.1              parallel_4.1.3        
[117] igraph_1.3.1           pkgconfig_2.0.3        plotly_4.10.0          spatstat.sparse_2.1-1 
[121] foreach_1.5.2          ggtree_3.2.1           XVector_0.34.0         yulab.utils_0.0.4     
[125] digest_0.6.29          sctransform_0.3.3      RcppAnnoy_0.0.19       spatstat.data_2.2-0   
[129] Biostrings_2.62.0      rmarkdown_2.14         leiden_0.4.2           fastmatch_1.1-3       
[133] tidytree_0.3.9         uwot_0.1.11            shiny_1.7.1            rjson_0.2.21          
[137] lifecycle_1.0.3        nlme_3.1-157           jsonlite_1.8.0         fansi_1.0.3           
[141] pillar_1.9.0           lattice_0.20-45        KEGGREST_1.34.0        fastmap_1.1.0         
[145] httr_1.4.3             survival_3.3-1         GO.db_3.14.0           glue_1.6.2            
[149] iterators_1.0.14       png_0.1-7              bit_4.0.4              ggforce_0.3.3         
[153] stringi_1.7.6          blob_1.2.3             memoise_2.0.1          irlba_2.3.5           
[157] future.apply_1.9.0     ape_5.6-2