README.md

# DellaVolpe_scRNA-seq

<details>
<summary markdown="span"><strong>Cellranger (v 6.1.1)</strong></summary>
 - cellranger count --localcores x  --id=${sample}_counts --libraries ${libcsv} --feature-ref ${featcsv} --transcriptome=${ref}
</details>

<details>
<summary markdown="span"><strong>Cell and feature filtering and HTO demultiplexing</strong></summary>
 - HTO_demux.R
</details>

<details>
<summary markdown="span"><strong>Check for gender bias</strong></summary>
 - Check_donor_bias.pdf
</details>

<details>
<summary markdown="span"><strong>Paper Figures</strong></summary>
 - scRNAseq_paper_figures.pdf
</details>