Update README.md

README.md

@@ -7,8 +7,18 @@ Kerzel T, Giacca G, Beretta S, Scotti MG, et al.
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 ### Directories and Files ###
-- SampleSheet.csv: names of samples and corresponding treatment condisions;
-- scripts: folder with R scripts used for the analyses.
+- SampleSheet.csv: names of samples and corresponding treatment condisions
+- scripts: folder with R scripts used for the analyses
+  - `0_PreProcessData.R`: initial analysis with DoubletFinder and Full object creation;
+  - `1_Analysis_TNK.R`: subset of T and NK, and analysis;
+  - `2_Analysis_APC.R`: subset of APC and analysis;
+  - `3_Analysis_UndRem.R`: integration of subset analyses and _undetermined_ removal;
+  - `4_Paper_Results.R`: post-analysis and visualization for paper.
+- data: results of the analyses
+  - Full_final_*: results of Full object analysis;
+  - APCs_cells_*: results of APC analysis;
+  - T_NK_cells_*: results of T and NK analysis;
+  - scRNAseq_*.xlsx: excel files with markers.
 
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