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Squadrito_LiverTumor2022
Squadrito_LiverTumor2022_Spatial
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f85375b2
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Jul 25, 2023
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Stefano Beretta
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# Squadrito_LiverTumor2022_Spatial
# Squadrito_LiverTumor2022_Spatial
Spatial Transcriptomics data of Liver Tumor paper.
Kerzel T, Giacca G, Beretta S, Scotti MG, et al.
\ No newline at end of file
**Targeted Interferon Delivery Through In Vivo Engineered Macrophages Eradicates Liver Metastases.**
2022.
GEO:
[
GSE221359
](
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221359
)
---
### Directories and Files ###
-
SampleSheet.csv: names of samples and corresponding treatment condisions
-
scripts: folder with R scripts used for the analyses
-
`0_Compute_Zones.R`
: initial analysis with Full object creation and zonation;
-
`1_GSEA_Visualization.R`
: analysis on zones with GSEA;
-
`2_SigZones_Visualization.R`
: in depth characterization of zones with signatures.
-
data: results of the analyses
-
GSEA_Zones_unique_integrated.res01.txt;
-
Zones_unique.integrated.txt;
-
crc.integrated_metadata.csv.gz;
-
miDB_sig3.rds.
---
### Analyses ###
Spatial Transcriptomics data of Liver Tumor paper.
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