Commit f85375b2 authored by Stefano Beretta's avatar Stefano Beretta
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# Squadrito_LiverTumor2022_Spatial # Squadrito_LiverTumor2022_Spatial
Spatial Transcriptomics data of Liver Tumor paper. Kerzel T, Giacca G, Beretta S, Scotti MG, et al.
\ No newline at end of file **Targeted Interferon Delivery Through In Vivo Engineered Macrophages Eradicates Liver Metastases.**
2022.
GEO: [GSE221359](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221359)
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### Directories and Files ###
- SampleSheet.csv: names of samples and corresponding treatment condisions
- scripts: folder with R scripts used for the analyses
- `0_Compute_Zones.R`: initial analysis with Full object creation and zonation;
- `1_GSEA_Visualization.R`: analysis on zones with GSEA;
- `2_SigZones_Visualization.R`: in depth characterization of zones with signatures.
- data: results of the analyses
- GSEA_Zones_unique_integrated.res01.txt;
- Zones_unique.integrated.txt;
- crc.integrated_metadata.csv.gz;
- miDB_sig3.rds.
---
### Analyses ###
Spatial Transcriptomics data of Liver Tumor paper.
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