Added paper data.

paper_data/HSPC_LNPsRNA-HSPC_UT-enr-h.all.v7.2.symbols-neg.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_E2F_TARGETS	HALLMARK_E2F_TARGETS	76/362	200/3429	1.22692302788824e-26	5.76653823107474e-25	5.16599169637155e-25	MYBL2/UNG/TK1/EZH2/LMNB1/MCM7/MCM4/CENPM/TCF19/MCM3/TIMELESS/HMGB3/KIF22/SMC1A/LIG1/RRM2/ASF1B/WDR90/POLE/POLD2/ESPL1/SSRP1/STMN1/ANP32E/MCM6/H2AZ1/SHMT1/H2AX/UBE2S/MCM2/RFC2/DDX39A/MXD3/CIT/POLD1/CDC25A/DNMT1/TACC3/MKI67/GINS3/CDKN2C/RANBP1/XRCC6/GINS4/MCM5/POP7/E2F8/TRA2B/CDCA3/HMGB2/DLGAP5/RAD51AP1/NOP56/SUV39H1/RBBP7/UBR7/CCNE1/SLBP/DONSON/KIF18B/SPAG5/RPA2/BIRC5/MSH2/GINS1/PRPS1/NUP205/UBE2T/HELLS/SRSF2/CTCF/SPC24/NCAPD2/NAA38/KIF4A/NASP	76
+HALLMARK_CHOLESTEROL_HOMEOSTASIS	HALLMARK_CHOLESTEROL_HOMEOSTASIS	29/362	64/3429	7.2505860227843e-13	1.70388771535431e-11	1.52643916269143e-11	HMGCS1/HMGCR/SQLE/LDLR/ACAT2/LSS/FDFT1/SCD/MVD/MVK/IDI1/TM7SF2/FADS2/FDPS/CYP51A1/SREBF2/DHCR7/TMEM97/PCYT2/FASN/ALDOC/STARD4/HSD17B7/SC5D/EBP/NSDHL/ACSS2/ATF5/ABCA2	29
+HALLMARK_G2M_CHECKPOINT	HALLMARK_G2M_CHECKPOINT	49/362	196/3429	2.09847871751454e-09	3.28761665743944e-08	2.9452332877397e-08	SQLE/MYBL2/CDC6/EZH2/LMNB1/MCM3/HMGB3/KIF22/SMC1A/DTYMK/CDC45/POLE/ESPL1/STMN1/MCM6/GINS2/FBXO5/H2AZ1/EWSR1/H2AX/UBE2S/MCM2/ATF5/DDX39A/E2F2/HMGN2/CDC25A/E2F1/CHAF1A/TACC3/MKI67/CDKN2C/MCM5/CHMP1A/KPNB1/TRA2B/SFPQ/KMT5A/SUV39H1/INCENP/TFDP1/RPA2/BIRC5/H2AZ2/SRSF2/CTCF/KIF4A/NASP/CCNF	49
+HALLMARK_MTORC1_SIGNALING	HALLMARK_MTORC1_SIGNALING	47/362	195/3429	1.6653281936229e-08	1.9567606275069e-07	1.75297704591884e-07	DHCR24/HMGCS1/HMGCR/INSIG1/SQLE/LDLR/SCD/IDI1/TM7SF2/FADS2/CYP51A1/DHCR7/TMEM97/FADS1/ELOVL6/STARD4/SC5D/EBP/IDH1/ACACA/ACLY/UNG/RDH11/CYB5B/MCM4/RRM2/ACSL3/PIK3R3/HSPA5/ADIPOR2/MCM2/TOMM40/DDX39A/CDC25A/SDF2L1/G6PD/DHFR/YKT6/SLC37A4/PPIA/HMBS/ELOVL5/NUP205/CALR/SLC9A3R1/ENO1/CCNF	47
+HALLMARK_MYC_TARGETS_V2	HALLMARK_MYC_TARGETS_V2	14/362	57/3429	0.00182999576343468	0.017201960176286	0.0154104906394499	TMEM97/SLC29A2/UNG/MCM4/LAS1L/SLC19A1/MCM5/NOP56/GRWD1/MRTO4/PUS1/MAP3K6/PPRC1/NOC4L	14
+HALLMARK_MYC_TARGETS_V1	HALLMARK_MYC_TARGETS_V1	34/362	200/3429	0.00279503956520046	0.0218944765940703	0.0196143127382488	MCM7/MCM4/CDC45/POLD2/SRSF7/MCM6/H2AZ1/MCM2/POLE3/CDK2/RANBP1/XRCC6/MCM5/KPNB1/TRA2B/PRPF31/PSMA7/PPM1G/NOP56/YWHAQ/HNRNPA2B1/RRM1/TFDP1/PPIA/SET/RNPS1/EIF3B/GOT2/SNRPA/SRSF2/SF3B3/TYMS/DHX15/SNRPD3	34

paper_data/HSPC_LNPsRNA-HSPC_UT-enr-h.all.v7.2.symbols-pos.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_P53_PATHWAY	HALLMARK_P53_PATHWAY	54/407	177/3429	6.58210105898105e-12	3.29105052949053e-10	2.42498460067723e-10	PHLDA3/ZMAT3/CDKN1A/FDXR/AEN/RPS27L/DDB2/MDM2/BAX/SESN1/XPC/POLH/JUN/BTG2/IER5/GADD45A/DRAM1/SDC1/TRIAP1/PLXNB2/ADA/DDIT4/FAS/CCNG1/TNFSF9/EPHA2/PLK2/PPM1D/PROCR/ATF3/PTPN14/PLK3/TM7SF3/DGKA/ISCU/PDGFA/CYFIP2/LIF/FUCA1/RGS16/PPP1R15A/RNF19B/APP/PITPNC1/TOB1/EPS8L2/SLC7A11/TAP1/APAF1/CD82/HMOX1/RHBDF2/CASP1/FAM162A	54
+HALLMARK_INFLAMMATORY_RESPONSE	HALLMARK_INFLAMMATORY_RESPONSE	38/407	135/3429	1.27100815311973e-07	3.17752038279932e-06	2.34133080837844e-06	CDKN1A/ABCA1/BTG2/TNFSF9/AXL/CD55/SCN1B/CD70/STAB1/IL4R/CD48/TNFSF10/AHR/BST2/RASGRP1/LIF/CXCL8/CSF1/ATP2C1/P2RX7/RGS16/GNA15/EIF2AK2/IRAK2/CD69/IL1B/GABBR1/IL18/GPR132/PLAUR/OSM/CHST2/MMP14/RGS1/ICAM1/CD82/NLRP3/NFKB1	38
+HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION	36/407	129/3429	3.52487133300014e-07	4.46950611204211e-06	3.29332029308366e-06	ACTA2/JUN/GADD45A/SDC1/FAS/VIM/CD44/LRP1/COL5A1/LAMC1/MMP2/FBLN2/TIMP3/TPM4/FSTL1/CXCL8/FUCA1/IGFBP4/ELN/THBS1/SERPINH1/PFN2/DST/CTHRC1/ITGA2/ENO2/COL8A2/CAPG/PLAUR/VEGFA/MMP14/LOX/CALU/COPA/NOTCH2/PMP22	36
+HALLMARK_IL2_STAT5_SIGNALING	HALLMARK_IL2_STAT5_SIGNALING	43/407	168/3429	3.57560488963369e-07	4.46950611204211e-06	3.29332029308366e-06	ANXA4/PLIN2/CD44/HK2/IL4R/RRAGD/CD48/TNFSF10/SH3BGRL2/DENND5A/NCOA3/AHR/PLSCR1/SWAP70/NCS1/LIF/CSF1/CTSZ/MYO1E/ST3GAL4/P4HA1/CKAP4/SYT11/RGS16/BATF3/GALM/SNX9/TRAF1/GUCY1B1/PRKCH/RABGAP1L/PRNP/BMPR2/SLC2A3/IL2RA/CCR4/CAPG/IGF2R/F2RL2/PLEC/NFIL3/MYO1C/TTC39B	43
+HALLMARK_APOPTOSIS	HALLMARK_APOPTOSIS	37/407	140/3429	1.0664630482357e-06	1.0664630482357e-05	7.8581487764736e-06	CDKN1A/FDXR/BAX/JUN/CD38/BTG2/GADD45A/FAS/CD44/ATF3/MMP2/LMNA/TNFSF10/TIMP3/PTK2/GPX1/PMAIP1/CCNA1/BIRC3/GNA15/CDC25B/CASP4/APP/CD69/IL1B/ROCK1/ENO2/BCL2L2/IL18/IGF2R/TOP2A/TAP1/HMOX1/DFFA/CASP1/CASP8/SQSTM1	37
+HALLMARK_TNFA_SIGNALING_VIA_NFKB	HALLMARK_TNFA_SIGNALING_VIA_NFKB	41/407	170/3429	3.64384601808254e-06	3.03653834840212e-05	2.23744930934893e-05	CDKN1A/ABCA1/JUN/BTG2/IER5/GADD45A/DRAM1/CD44/TNFSF9/PLK2/ATF3/DUSP4/PLAU/EIF1/DENND5A/FOSL1/LIF/CSF1/LAMB3/PNRC1/PPP1R15A/BIRC3/TRIP10/NR4A1/TRAF1/RNF19B/NFAT5/CD69/IL1B/SLC2A3/IL18/TAP1/SMAD3/PLAUR/VEGFA/LITAF/ICAM1/NFIL3/CXCL3/NFKB1/SQSTM1	41
+HALLMARK_KRAS_SIGNALING_UP	HALLMARK_KRAS_SIGNALING_UP	30/407	127/3429	0.000118196035911739	0.000844257399369568	0.000622084399535471	ADGRA2/CCSER2/SCN1B/PLAU/CTSS/GPNMB/ST6GAL1/ZNF277/LIF/CROT/CXCR4/ETS1/FUCA1/ACE/RGS16/PPP1R15A/BIRC3/PRDM1/TRAF1/PLVAP/RABGAP1L/EPB41L3/LY96/ITGA2/IL1B/TSPAN7/USP12/PLAUR/CBL/LAT2	30
+HALLMARK_HYPOXIA	HALLMARK_HYPOXIA	31/407	156/3429	0.00218644169908488	0.0136652606192805	0.0100691394036804	CDKN1A/JUN/PLIN2/DDIT4/COL5A1/ATF3/HK2/PGF/RRAGD/P4HA2/HS3ST1/VLDLR/PAM/CXCR4/ETS1/P4HA1/PNRC1/PPP1R15A/NR3C1/MXI1/ENO2/KIF5A/SLC2A3/PLAUR/VEGFA/CHST2/NFIL3/HMOX1/LOX/PDK3/FAM162A	31
+HALLMARK_INTERFERON_ALPHA_RESPONSE	HALLMARK_INTERFERON_ALPHA_RESPONSE	20/407	92/3429	0.00460100063854256	0.0255611146585698	0.0188345055378935	TRIM5/PROCR/IL4R/B2M/BST2/PLSCR1/CSF1/LPAR6/GBP2/PSMB9/EIF2AK2/PARP14/TAP1/SAMD9L/TENT5A/DDX60/CASP1/UBE2L6/SP110/CASP8	20
+HALLMARK_INTERFERON_GAMMA_RESPONSE	HALLMARK_INTERFERON_GAMMA_RESPONSE	32/407	176/3429	0.00778886096023671	0.0389443048011835	0.0286958035377142	CDKN1A/CD38/FAS/HLA-A/IL4R/HLA-B/B2M/TNFSF10/NCOA3/BST2/PLSCR1/OAS2/ZNFX1/PSMB9/EIF2AK2/CASP4/MVP/ITGB7/CD69/SLAMF7/PARP14/TAP1/SAMD9L/ICAM1/DDX60/CASP1/UBE2L6/EIF4E3/SP110/RNF213/CASP8/NFKB1	32
+HALLMARK_IL6_JAK_STAT3_SIGNALING	HALLMARK_IL6_JAK_STAT3_SIGNALING	15/407	66/3429	0.0088038886748034	0.0389497191217939	0.0286997930371113	JUN/CD38/FAS/CD44/IL4R/CSF1/PDGFC/CD9/IL1B/IL2RA/CBL/HMOX1/IL12RB1/CXCL3/LEPR	15
+HALLMARK_ALLOGRAFT_REJECTION	HALLMARK_ALLOGRAFT_REJECTION	27/407	144/3429	0.00934793258923053	0.0389497191217939	0.0286997930371113	FAS/HLA-A/PRKCB/ITGAL/STAB1/IL4R/HLA-DOA/CTSS/B2M/HLA-E/LIF/CSF1/ETS1/GBP2/RPS19/IL1B/IL2RA/IL18/CAPG/PTPRC/TAP1/GCNT1/ICAM1/NCF4/IL12RB1/NLRP3/TAP2	27

paper_data/HSPC_LNPsRNA-HSPC_UTelectro-enr-h.all.v7.2.symbols-neg.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_CHOLESTEROL_HOMEOSTASIS	HALLMARK_CHOLESTEROL_HOMEOSTASIS	36/466	66/3589	4.59003140804278e-16	2.29501570402139e-14	1.64274808287847e-14	HMGCS1/HMGCR/SQLE/LDLR/ACAT2/FDFT1/LSS/MVD/SCD/IDI1/MVK/TM7SF2/FDPS/FADS2/CYP51A1/SREBF2/CD9/DHCR7/STARD4/ALDOC/TMEM97/HSD17B7/FASN/PCYT2/SC5D/ANTXR2/NSDHL/ACSS2/EBP/CLU/GNAI1/TNFRSF12A/TRIB3/ATF5/CXCL16/AVPR1A	36
+HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION	40/466	144/3589	1.05627569222695e-06	2.64068923056737e-05	1.89017755451138e-05	ECM1/LGALS1/GPC1/ID2/ITGB5/VIM/TIMP3/MMP14/PRSS2/ELN/CD44/THBS1/TIMP1/SFRP4/SDC4/FLNA/SCG2/SPP1/DAB2/GEM/INHBA/NT5E/ITGB3/CXCL8/TNFRSF12A/VCAN/EMP3/TGFB1/SERPINE1/PMP22/COL6A2/COL6A3/LRP1/MCM7/GJA1/SPARC/PMEPA1/COL7A1/HTRA1/PDLIM4	40
+HALLMARK_IL2_STAT5_SIGNALING	HALLMARK_IL2_STAT5_SIGNALING	45/466	174/3589	1.95507240220199e-06	3.25845400366999e-05	2.33236707631115e-05	PLEC/ECM1/NCS1/IL1RL1/CSF1/SLC29A2/TNFRSF18/SLC2A3/HOPX/PIM1/EMP1/BHLHE40/CD44/CDC6/AHR/TNFRSF4/AHNAK/KLF6/CDKN1C/IL4R/CDCP1/LIF/IL18R1/SOCS2/COL6A1/SPP1/NT5E/MYO1C/NRP1/MAFF/IL10RA/IL2RB/MXD1/NDRG1/NFKBIZ/IL2RA/PNP/LTB/GSTO1/SPRY4/CISH/RORA/CCND3/NOP2/TRAF1	45
+HALLMARK_COAGULATION	HALLMARK_COAGULATION	27/466	90/3589	1.38320451301157e-05	0.000172900564126446	0.000123760403795772	CD9/GSN/PROS1/CAPN2/VWF/TIMP3/MMP14/PRSS23/ANXA1/DUSP6/CLU/THBS1/TIMP1/CRIP2/RAPGEF3/DUSP14/ITGB3/MAFF/SERPINE1/MMP7/LRP1/THBD/RABIF/SPARC/WDR1/HTRA1/RAC1	27
+HALLMARK_TNFA_SIGNALING_VIA_NFKB	HALLMARK_TNFA_SIGNALING_VIA_NFKB	42/466	176/3589	3.7519625211427e-05	0.00037519625211427	0.000268561527829162	LDLR/NR4A1/EGR3/PPP1R15A/CSF1/SLC2A3/ID2/LAMB3/PHLDA2/BHLHE40/CD44/SQSTM1/SPHK1/KLF6/CCL5/CCND1/SLC2A6/KLF10/NR4A2/RELB/PTGS2/LIF/SDC4/SOD2/PTGER4/EGR1/GEM/INHBA/TRIB1/DUSP5/SOCS3/MAFF/SERPINE1/CCL2/MXD1/STAT5A/ZC3H12A/EGR2/MCL1/PMEPA1/MAP2K3/TRAF1	42
+HALLMARK_INFLAMMATORY_RESPONSE	HALLMARK_INFLAMMATORY_RESPONSE	35/466	143/3589	9.86506033569302e-05	0.000822088361307752	0.000588442195462391	LDLR/CSF1/MMP14/SEMA4D/STAB1/AHR/TIMP1/SPHK1/KLF6/CCL5/C5AR1/IL4R/C3AR1/LIF/IL18R1/PTGER4/DCBLD2/INHBA/ITGB3/RGS1/CXCL8/SLC7A1/LCP2/PTGIR/EMP3/IL10RA/SERPINE1/IL2RB/CCL2/MXD1/EREG/AXL/IRF7/CD55/ADORA2B	35
+HALLMARK_ANDROGEN_RESPONSE	HALLMARK_ANDROGEN_RESPONSE	24/466	91/3589	0.00038396382696144	0.00274259876401028	0.00196312332581789	HMGCS1/HMGCR/INSIG1/DHCR24/SCD/IDI1/FADS1/GUCY1A1/ABHD2/KRT8/CCND1/PTK2B/H1-0/ARID5B/ACSL3/CDK6/NDRG1/ZMIZ1/ELOVL5/KRT19/PMEPA1/CCND3/SRF/ELL2	24
+HALLMARK_MTORC1_SIGNALING	HALLMARK_MTORC1_SIGNALING	42/466	196/3589	0.000490154574601854	0.00306346609126159	0.00219279678111356	HMGCS1/HMGCR/INSIG1/SQLE/LDLR/DHCR24/SCD/IDI1/TM7SF2/FADS2/CYP51A1/CD9/DHCR7/STARD4/TMEM97/FADS1/SC5D/PPP1R15A/SLC2A3/SLA/EBP/ELOVL6/BHLHE40/RDH11/SQSTM1/ACLY/DDIT3/ACACA/CYB5B/UNG/IDH1/MCM4/ADIPOR2/RRM2/TRIB3/ACSL3/ENO1/PNP/ELOVL5/YKT6/SLC6A6/MAP2K3	42
+HALLMARK_APOPTOSIS	HALLMARK_APOPTOSIS	33/466	145/3589	0.000657291794463544	0.00365162108035302	0.00261379193120006	GSN/EGR3/SC5D/TXNIP/TIMP3/LMNA/EBP/BMF/ANXA1/EMP1/CLU/CD44/SLC20A1/TIMP1/SQSTM1/DDIT3/CCND1/SOD2/CCNA1/ISG20/H1-0/KRT18/CASP2/TNFRSF12A/PEA15/EREG/MADD/MCL1/HGF/ERBB2/BCL2L11/GPX1/AVPR1A	33
+HALLMARK_MYOGENESIS	HALLMARK_MYOGENESIS	31/466	137/3589	0.00105699491115044	0.00528497455575221	0.00378292915569632	SCD/FDPS/CD36/KIFC3/GSN/LPIN1/ITGB5/PTP4A3/CNN3/CLU/BHLHE40/SPHK1/CAMK2B/HDAC5/DMPK/TNNT1/MYO1C/CACNA1H/AEBP1/TGFB1/ITGB4/ATP2A1/COL6A2/PDLIM7/COL6A3/ITGA7/BAG1/MYH9/MYH3/SPARC/MEF2D	31
+HALLMARK_ESTROGEN_RESPONSE_EARLY	HALLMARK_ESTROGEN_RESPONSE_EARLY	33/466	159/3589	0.00339694246474378	0.0154406475670172	0.0110522529953386	FDFT1/DLC1/DHCR7/FASN/EGR3/ENDOD1/ABHD2/PRSS23/TMEM164/FHL2/BHLHE40/CD44/KCNK5/NRIP1/KRT8/CCND1/KLF10/AQP3/DHRS2/KRT18/AR/CELSR1/ELF1/SLC24A3/ELOVL5/BAG1/TTC39A/CISH/GJA1/KRT19/IL17RB/RET/MAST4	33
+HALLMARK_KRAS_SIGNALING_UP	HALLMARK_KRAS_SIGNALING_UP	29/466	138/3589	0.00489166714213366	0.0203819464255569	0.0145891827046092	VWA5A/PPP1R15A/ACE/ID2/GUCY1A1/EMP1/DUSP6/TMEM158/LAT2/LAPTM5/C3AR1/PTGS2/LIF/DCBLD2/SPP1/F13A1/INHBA/KCNN4/PCSK1N/TRIB1/MYCN/NRP1/WNT7A/ADAM8/IL10RA/EREG/JUP/PTBP2/TRAF1	29
+HALLMARK_UV_RESPONSE_DN	HALLMARK_UV_RESPONSE_DN	26/466	123/3589	0.00695313215874911	0.0267428159951889	0.0191422261860299	INSIG1/LDLR/DLC1/ANXA2/FHL2/BHLHE40/CELF2/DAB2/MAP1B/SYNJ2/ITGB3/NRP1/SLC7A1/SERPINE1/PMP22/ZMIZ1/WDR37/ATXN1/ADORA2B/GJA1/ERBB2/MGLL/RUNX1/PIAS3/GRK5/SYNE1	26

paper_data/HSPC_LNPsRNA-HSPC_UTelectro-enr-h.all.v7.2.symbols-pos.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_P53_PATHWAY	HALLMARK_P53_PATHWAY	64/643	180/3589	5.02976783431596e-09	2.51488391715798e-07	2.22368683201337e-07	ZMAT3/FDXR/PHLDA3/AEN/BAX/DDB2/DRAM1/TM7SF3/SESN1/RPS27L/POLH/TAP1/GM2A/CCNG1/MDM2/TRIAP1/ADA/APP/FAS/PROCR/TNFSF9/IER5/PLK2/CDKN1A/XPC/RXRA/FUCA1/APAF1/BTG2/PLXNB2/PPM1D/HINT1/ALOX15B/SDC1/VAMP8/CASP1/TPD52L1/CEBPA/ACVR1B/FAM162A/NINJ1/CYFIP2/GADD45A/MKNK2/CCP110/RNF19B/SLC35D1/F2R/IRAK1/ISCU/IRAG2/SLC7A11/SEC61A1/RGS16/PIDD1/RHBDF2/FOXO3/EI24/SLC19A2/TSC22D1/CTSD/TOB1/EPHA2/NUDT15	64
+HALLMARK_INTERFERON_ALPHA_RESPONSE	HALLMARK_INTERFERON_ALPHA_RESPONSE	29/643	93/3589	0.00116107529111303	0.0290268822778258	0.0256658748561828	TAP1/TENT5A/B2M/PSMB9/BST2/TRIM5/PROCR/PSMB8/SELL/HLA-C/PSME1/CASP1/UBE2L6/SAMD9L/SP110/EPSTI1/IL7/IFIT2/IFIH1/PARP9/EIF2AK2/IFI44L/LPAR6/PARP14/TRIM26/LAMP3/MVB12A/DDX60/PSME2	29

paper_data/HSPC_LNPsRNA-HSPC_electroRNA-enr-h.all.v7.2.symbols-neg.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_CHOLESTEROL_HOMEOSTASIS	HALLMARK_CHOLESTEROL_HOMEOSTASIS	38/505	66/3619	6.91646771174295e-17	3.45823385587148e-15	2.40256246828966e-15	HMGCS1/HMGCR/FDFT1/SQLE/LDLR/ACAT2/LSS/MVD/SCD/MVK/IDI1/TM7SF2/FDPS/SREBF2/CYP51A1/FADS2/STARD4/CD9/DHCR7/HSD17B7/FASN/ALDOC/TMEM97/PCYT2/SC5D/NSDHL/ANTXR2/EBP/GNAI1/ACSS2/CLU/CXCL16/TNFRSF12A/ABCA2/TP53INP1/TRIB3/ACTG1/AVPR1A	38
+HALLMARK_TNFA_SIGNALING_VIA_NFKB	HALLMARK_TNFA_SIGNALING_VIA_NFKB	52/505	179/3619	5.26188543258099e-08	1.31547135814525e-06	9.1390641723775e-07	LDLR/EGR3/CSF1/NR4A1/PPP1R15A/ID2/SLC2A3/CD44/CDKN1A/LAMB3/BHLHE40/PTGER4/PHLDA2/SQSTM1/CCND1/CCL5/LIF/PTGS2/RELB/EGR1/NR4A2/INHBA/SDC4/SPHK1/SLC2A6/KLF6/GADD45A/DUSP5/KLF10/MXD1/TRIB1/SERPINE1/TRAF1/MAFF/GEM/PTPRE/MCL1/NFKB2/RHOB/IER5/SOD2/FOSL1/STAT5A/TNIP1/EGR2/PMEPA1/GADD45B/CCL2/CFLAR/IER3/NFKBIA/PLK2	52
+HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION	44/505	147/3619	2.35081358115149e-07	3.91802263525249e-06	2.72199467291226e-06	ECM1/GPC1/LGALS1/MMP14/ID2/TIMP3/VIM/ITGB5/CD44/THBS1/PRSS2/ELN/LRP1/FLNA/INHBA/TIMP1/SDC4/DAB2/SPP1/GADD45A/SFRP4/SERPINE1/TGFB1/CXCL8/ACTA2/SCG2/GEM/COL6A2/VCAN/NT5E/RHOB/ITGB3/GJA1/FMOD/TNFRSF12A/COL6A3/HTRA1/PMEPA1/GADD45B/SDC1/CAPG/PDLIM4/MCM7/PMP22	44
+HALLMARK_P53_PATHWAY	HALLMARK_P53_PATHWAY	48/505	181/3619	3.39632621919888e-06	4.2454077739986e-05	2.94944119035692e-05	VWA5A/TM4SF1/S100A10/PPP1R15A/MDM2/CDKN1A/DGKA/TXNIP/ABHD4/XPC/LIF/PLXNB2/STOM/TSPYL2/UPP1/PLK3/ZBTB16/RPS27L/DDIT3/SPHK1/GADD45A/MXD1/TGFB1/S100A4/BAIAP2/PHLDA3/DDB2/PTPRE/PVT1/VDR/FDXR/NOTCH1/IER5/CYFIP2/AEN/EPHA2/SDC1/TRIB3/CTSF/PDGFA/PTPN14/IER3/CCND3/RALGDS/CDKN2AIP/PCNA/PLK2/SLC3A2	48
+HALLMARK_IL2_STAT5_SIGNALING	HALLMARK_IL2_STAT5_SIGNALING	45/505	175/3619	1.67377978302914e-05	0.000167377978302914	0.00011628364808413	PLEC/ECM1/NCS1/IL1RL1/CSF1/SLC29A2/SLC2A3/TNFRSF18/CD44/HOPX/BHLHE40/PIM1/AHR/IL4R/EMP1/CDKN1C/LIF/CDCP1/AHNAK/CDC6/COL6A1/TNFRSF4/IL18R1/SPP1/KLF6/IL2RB/MXD1/IL10RA/TRAF1/MAFF/NRP1/NFKBIZ/NT5E/SPRY4/CAPN3/SOCS2/RHOB/MYO1C/HUWE1/NOP2/P2RX4/GADD45B/RORA/CAPG/CCND3	45
+HALLMARK_APOPTOSIS	HALLMARK_APOPTOSIS	39/505	145/3619	2.0653054824754e-05	0.000172108790206283	0.00011957031740647	EGR3/GSN/LMNA/TIMP3/SC5D/CD44/CDKN1A/EBP/TXNIP/CCNA1/BMF/EMP1/SQSTM1/SLC20A1/CCND1/ANXA1/TIMP1/DDIT3/CASP2/GADD45A/CLU/GPX1/KRT18/FDXR/MCL1/RHOB/PEA15/ERBB2/SOD2/CAV1/TNFRSF12A/MADD/GADD45B/PTK2/EREG/AVPR1A/CFLAR/IER3/PLAT	39
+HALLMARK_INFLAMMATORY_RESPONSE	HALLMARK_INFLAMMATORY_RESPONSE	38/505	146/3619	5.85346017267963e-05	0.000418104298048545	0.000290472459696884	LDLR/CSF1/MMP14/SEMA4D/CDKN1A/STAB1/PTGER4/AHR/IL4R/CCL5/LIF/C3AR1/C5AR1/INHBA/TIMP1/RGS1/IL18R1/SPHK1/KLF6/PTGIR/IL2RB/MXD1/DCBLD2/SERPINE1/CXCL8/IRF7/IL10RA/PTPRE/SLC7A1/LCP2/ITGB3/CD55/P2RX4/EREG/AXL/CCL2/HIF1A/NFKBIA	38
+HALLMARK_MYOGENESIS	HALLMARK_MYOGENESIS	35/505	139/3619	0.000234310653130446	0.00146444158206529	0.00101740152017167	SCD/FDPS/CD36/GSN/KIFC3/LPIN1/PTP4A3/ITGB5/CDKN1A/BHLHE40/CNN3/HDAC5/PLXNB2/CAMK2B/SPHK1/CLU/AGRN/TGFB1/AEBP1/MEF2D/COL6A2/MYH9/ATP2A1/NOTCH1/ITGA7/EFS/MYO1C/CACNA1H/PDLIM7/COL6A3/GADD45B/MYH11/DMPK/GJA5/BAG1	35
+HALLMARK_COAGULATION	HALLMARK_COAGULATION	25/505	90/3619	0.000379125897666208	0.00210625498703449	0.0014632929383608	CD9/MMP14/PROS1/GSN/VWF/CAPN2/TIMP3/DUSP6/PRSS23/THBS1/LRP1/ANXA1/CRIP2/TIMP1/RAPGEF3/CLU/SERPINE1/MAFF/DUSP14/ITGB3/WDR1/THBD/MMP7/HTRA1/PLAT	25
+HALLMARK_ANDROGEN_RESPONSE	HALLMARK_ANDROGEN_RESPONSE	22/505	92/3619	0.00652949841644917	0.0326474920822458	0.0226814155518761	HMGCS1/HMGCR/INSIG1/DHCR24/SCD/IDI1/FADS1/ABHD2/GUCY1A1/PTK2B/CCND1/KRT8/ZMIZ1/CDK6/AKAP12/ELOVL5/ELL2/ACSL3/ARID5B/PMEPA1/SRF/CCND3	22
+HALLMARK_HEDGEHOG_SIGNALING	HALLMARK_HEDGEHOG_SIGNALING	9/505	27/3619	0.0084579917136519	0.0384454168802359	0.0267094475167955	HEY1/CDK6/CELSR1/SCG2/NRP1/MYH9/NRP2/TLE3/RTN1	9

paper_data/HSPC_LNPsRNA-HSPC_electroRNA-enr-h.all.v7.2.symbols-pos.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_OXIDATIVE_PHOSPHORYLATION	HALLMARK_OXIDATIVE_PHOSPHORYLATION	73/664	199/3619	2.27590124324463e-10	1.13795062162231e-08	1.00618791806605e-08	NNT/SLC25A5/ACAT1/OAT/COX7C/ACADSB/ETFA/IDH2/LDHA/COX7A2L/CASP7/ATP5F1B/GOT2/MRPS15/COX11/MDH2/PRDX3/COX6A1/COX7A2/AIFM1/ALDH6A1/HADHA/GPI/UQCRC2/ATP5F1A/HTRA2/SUCLG1/NDUFS3/OPA1/RHOT1/NDUFV1/MPC1/ATP5PB/ATP5MC3/MRPL34/COX7B/NDUFS7/CS/SDHD/NDUFS2/UQCRH/COX5A/ATP6V0E1/ATP5F1C/NDUFA2/NDUFA3/COX4I1/ABCB7/HADHB/PDHA1/DLD/COX8A/IDH3B/NDUFS6/ATP5MC1/UQCRB/UQCRC1/NDUFA4/VDAC2/ATP5PD/NDUFAB1/HSPA9/FDX1/NDUFA1/UQCRQ/NDUFB6/TIMM9/COX5B/ACAA1/SDHC/NDUFB2/MRPL11/SDHB	73
+HALLMARK_HEME_METABOLISM	HALLMARK_HEME_METABOLISM	56/664	187/3619	5.11252548223729e-05	0.00127813137055932	0.00113013721186298	CTSB/ALAD/TENT5C/NNT/KLF1/TFRC/EPOR/LAMP2/BNIP3L/FECH/GYPC/ACP5/BLVRB/HEBP1/TRIM58/AHSP/MARCHF8/ALAS2/KLF3/TMCC2/SLC25A38/TFDP2/SELENBP1/IGSF3/CLIC2/ALDH6A1/GYPE/BLVRA/SEC14L1/SLC7A11/PICALM/HTRA2/EPB41/CAT/SLC11A2/PRDX2/EPB42/XPO7/CPOX/CLCN3/FN3K/KEL/SLC66A2/GCLC/BCAM/GDE1/SIDT2/NFE2/TOP1/NR3C1/FOXO3/NARF/ABCG2/TAL1/BPGM/GATA1	56
+HALLMARK_GLYCOLYSIS	HALLMARK_GLYCOLYSIS	50/664	172/3619	0.000293064176467568	0.00488440294112614	0.00431884049531153	COL5A1/CHST2/CXCR4/RRAGD/PYGL/FKBP4/HK2/TALDO1/ALDH7A1/GUSB/B4GALT1/EXT2/PAM/GLRX/BIK/LDHA/ERO1A/ME2/GOT2/MDH2/P4HA1/FAM162A/PGK1/RPE/SLC37A4/TXN/PLOD2/SLC25A10/B4GALT4/GCLC/VLDLR/GALK2/AK4/PLOD1/ALDH9A1/DLD/CASP6/HS2ST1/LHPP/AK3/STMN1/GLCE/AGL/FUT8/SOD1/PGM2/PKP2/SDHC/AKR1A1/CLDN9	50
+HALLMARK_ADIPOGENESIS	HALLMARK_ADIPOGENESIS	49/664	179/3619	0.00149138973399785	0.0171282305089358	0.0151449617131643	ABCA1/TALDO1/APOE/TST/PGM1/HADH/APLP2/FAH/DHRS7/HIBCH/ATP1B3/ALDH2/VEGFB/ESRRA/PPP1R15B/MDH2/PRDX3/COQ3/COX6A1/AIFM1/CD302/RTN3/AK2/SUCLG1/NDUFS3/CAT/LPCAT3/PTGER3/COX7B/CHCHD10/CS/CMBL/SLC25A10/GHITM/DLD/COX8A/UQCRC1/SAMM50/NDUFAB1/IFNGR1/ACADS/EPHX2/UQCRQ/SOD1/PDCD4/SDHC/BCL6/SDHB/SLC1A5	49
+HALLMARK_INTERFERON_ALPHA_RESPONSE	HALLMARK_INTERFERON_ALPHA_RESPONSE	29/664	93/3619	0.00171282305089358	0.0171282305089358	0.0151449617131643	SELL/PSMB9/B2M/TAP1/EPSTI1/TENT5A/PSMB8/IL7/PSME1/PROCR/BST2/IFIT2/TRIM26/CASP1/SAMD9L/CMPK2/UBE2L6/HLA-C/EIF2AK2/IFIT3/MVB12A/IFI44L/PARP9/OAS1/PSME2/LAMP3/LPAR6/IFITM3/LGALS3BP	29
+HALLMARK_INTERFERON_GAMMA_RESPONSE	HALLMARK_INTERFERON_GAMMA_RESPONSE	48/664	183/3619	0.00427327095307764	0.0326615227433057	0.0288796622151335	CSF2RB/PSMB9/B2M/TAP1/ITGB7/EPSTI1/VAMP8/HLA-A/SERPING1/PSMB8/IL7/OAS2/PSME1/TNFSF10/TNFAIP2/APOL6/BST2/IFIT1/IFIT2/TRIM26/CASP7/CFH/CASP1/SAMD9L/SELP/HLA-B/OAS3/CMPK2/UBE2L6/EIF4E3/SAMHD1/EIF2AK2/PDE4B/ICAM1/CASP4/IFIT3/ISOC1/HLA-DRB1/IFI44L/AUTS2/NFKB1/PSME2/CD38/GZMA/ST3GAL5/BPGM/IFITM3/LGALS3BP	48
+HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY	HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY	17/664	49/3619	0.0045726131840628	0.0326615227433057	0.0288796622151335	MPO/LSP1/GLRX/FTL/PRNP/PRDX1/PRDX4/LAMTOR5/TXN/CAT/PRDX2/NDUFS2/GCLC/HMOX2/SOD1/MGST1/TXNRD1	17

paper_data/HSPC_LNPsRNA-HSPC_electroRNP-enr-h.all.v7.2.symbols-neg.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_CHOLESTEROL_HOMEOSTASIS	HALLMARK_CHOLESTEROL_HOMEOSTASIS	34/485	66/3619	8.05528863999684e-14	4.02764431999842e-12	2.7981528959989e-12	HMGCS1/SQLE/LDLR/HMGCR/FDFT1/ACAT2/LSS/MVD/SCD/IDI1/MVK/TM7SF2/CD9/SREBF2/CYP51A1/FDPS/FADS2/STARD4/DHCR7/HSD17B7/ALDOC/TMEM97/FASN/ANTXR2/PCYT2/NSDHL/SC5D/EBP/GNAI1/CLU/ACSS2/TNFRSF12A/CXCL16/AVPR1A	34
+HALLMARK_TNFA_SIGNALING_VIA_NFKB	HALLMARK_TNFA_SIGNALING_VIA_NFKB	50/485	179/3619	1.01402471870691e-07	2.53506179676728e-06	1.7612008272278e-06	LDLR/NR4A1/EGR3/PPP1R15A/CSF1/ID2/CD44/LAMB3/PHLDA2/PTGS2/KLF6/SQSTM1/CDKN1A/CCL5/PTGER4/SLC2A3/SPHK1/BHLHE40/SDC4/LIF/EGR1/TRIB1/CCND1/SLC2A6/KLF10/RELB/NR4A2/INHBA/GEM/PTPRE/SERPINE1/MXD1/SOCS3/MCL1/TRAF1/DUSP5/SOD2/PHLDA1/GPR183/PMEPA1/MAFF/NFKB2/FOSL1/STAT5A/ZC3H12A/CCL2/MAP2K3/KLF4/IER3/CXCL2	50
+HALLMARK_IL2_STAT5_SIGNALING	HALLMARK_IL2_STAT5_SIGNALING	48/485	175/3619	3.42330923788095e-07	5.70551539646826e-06	3.96383174912532e-06	PLEC/NCS1/ECM1/IL1RL1/CSF1/CD44/SLC29A2/EMP1/TNFRSF18/HOPX/AHR/PIM1/KLF6/SPP1/SLC2A3/IL4R/AHNAK/BHLHE40/LIF/CDC6/CDCP1/CDKN1C/TNFRSF4/IL18R1/IL10RA/COL6A1/NRP1/IL2RB/MYO1C/NT5E/PLIN2/MXD1/SPRY4/CAPG/TRAF1/GSTO1/NFKBIZ/NDRG1/PNP/PHLDA1/SOCS2/CYFIP1/LTB/MAFF/IL2RA/CAPN3/CCND3/CISH	48
+HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION	42/485	147/3619	5.86959048681588e-07	7.33698810851986e-06	5.09727594907695e-06	ECM1/LGALS1/GPC1/VIM/ID2/TIMP3/CD44/MMP14/ITGB5/ELN/TIMP1/PRSS2/SPP1/LRP1/SDC4/FLNA/SFRP4/SCG2/THBS1/INHBA/GEM/NT5E/TNFRSF12A/SERPINE1/CXCL8/VCAN/CAPG/COL6A2/TGFB1/DAB2/SPARC/PMP22/HTRA1/EMP3/PMEPA1/GJA1/ACTA2/IGFBP2/PDLIM4/MCM7/COL7A1/ITGB3	42
+HALLMARK_COAGULATION	HALLMARK_COAGULATION	28/485	90/3619	8.19189058332695e-06	8.19189058332695e-05	5.69120819473241e-05	CD9/GSN/CAPN2/PROS1/TIMP3/MMP14/ANXA1/DUSP6/VWF/PRSS23/TIMP1/LRP1/CLU/CRIP2/THBS1/RAPGEF3/SERPINE1/DUSP14/MMP7/SPARC/WDR1/HTRA1/MAFF/PEF1/PLAT/THBD/ITGB3/CTSO	28
+HALLMARK_INFLAMMATORY_RESPONSE	HALLMARK_INFLAMMATORY_RESPONSE	37/485	146/3619	5.59573011202946e-05	0.000466310842669122	0.00032396332227539	LDLR/CSF1/MMP14/STAB1/SEMA4D/AHR/TIMP1/KLF6/CDKN1A/CCL5/PTGER4/IL4R/SPHK1/C3AR1/LIF/C5AR1/IL18R1/IL10RA/DCBLD2/RGS1/CD55/INHBA/IL2RB/AXL/PTPRE/SERPINE1/CXCL8/MXD1/PTGIR/LCP2/ADORA2B/IRF7/GPR183/EMP3/EREG/CCL2/ITGB3	37
+HALLMARK_MYOGENESIS	HALLMARK_MYOGENESIS	34/485	139/3619	0.000236748530913395	0.00169106093509568	0.00117484233385595	SCD/CD36/FDPS/GSN/KIFC3/ITGB5/LPIN1/PTP4A3/CDKN1A/CAMK2B/CLU/SPHK1/BHLHE40/CNN3/HDAC5/AEBP1/MYO1C/CACNA1H/PLXNB2/COL6A2/TGFB1/DMPK/SPARC/MEF2D/PDLIM7/AGRN/BAG1/ITGA7/EFS/MYH11/MYH9/EPHB3/MEF2A/PYGM	34
+HALLMARK_APOPTOSIS	HALLMARK_APOPTOSIS	34/485	145/3619	0.000552210136173434	0.00345131335108396	0.0023977545386478	GSN/LMNA/EGR3/TXNIP/TIMP3/CD44/ANXA1/CCNA1/EMP1/SC5D/EBP/TIMP1/SLC20A1/BMF/SQSTM1/CDKN1A/CLU/DDIT3/CASP2/CCND1/GPX1/HGF/KRT18/TNFRSF12A/MCL1/PEA15/PTK2/SOD2/EREG/AVPR1A/ERBB2/PLAT/IER3/HSPB1	34
+HALLMARK_ANDROGEN_RESPONSE	HALLMARK_ANDROGEN_RESPONSE	23/485	92/3619	0.00175936919875606	0.0090260218179231	0.0062707098945571	HMGCS1/INSIG1/HMGCR/DHCR24/SCD/IDI1/FADS1/ABHD2/PTK2B/GUCY1A1/CCND1/KRT8/CDK6/ELL2/ARID5B/ACSL3/NDRG1/ZMIZ1/KRT19/AKAP12/PMEPA1/ELOVL5/CCND3	23
+HALLMARK_MTORC1_SIGNALING	HALLMARK_MTORC1_SIGNALING	41/485	196/3619	0.00180520436358462	0.0090260218179231	0.0062707098945571	HMGCS1/INSIG1/SQLE/LDLR/HMGCR/DHCR24/SCD/IDI1/TM7SF2/CD9/CYP51A1/FADS2/STARD4/DHCR7/FADS1/PPP1R15A/TMEM97/SLA/SC5D/EBP/SQSTM1/CDKN1A/SLC2A3/BHLHE40/RDH11/DDIT3/ACACA/ACLY/ELOVL6/CYB5B/ENO1/IDH1/ACSL3/MCM4/PNP/ADIPOR2/YKT6/RRM2/ELOVL5/MAP2K3/UNG	41
+HALLMARK_KRAS_SIGNALING_UP	HALLMARK_KRAS_SIGNALING_UP	31/485	140/3619	0.0025814204565396	0.0117337293479073	0.00815185407328295	VWA5A/PPP1R15A/ID2/ACE/EMP1/DUSP6/PTGS2/SPP1/GUCY1A1/TMEM158/LAPTM5/LAT2/C3AR1/LIF/TRIB1/IL10RA/KCNN4/PCSK1N/DCBLD2/NRP1/ADAM8/INHBA/WNT7A/TRAF1/F13A1/JUP/AKAP12/MYCN/EREG/PLAT/KLF4	31
+HALLMARK_ESTROGEN_RESPONSE_EARLY	HALLMARK_ESTROGEN_RESPONSE_EARLY	34/485	161/3619	0.00372553431688764	0.0143429218799795	0.00996455625345946	FDFT1/DLC1/DHCR7/EGR3/FASN/CD44/TMEM164/ENDOD1/FHL2/PRSS23/ABHD2/KCNK5/BHLHE40/NRIP1/AQP3/CCND1/KRT8/KLF10/KRT18/CELSR1/MAST4/DHRS2/AR/SLC24A3/TTC39A/KRT19/ELF1/RET/GJA1/BAG1/ELOVL5/CISH/KLF4/SCARB1	34
+HALLMARK_HYPOXIA	HALLMARK_HYPOXIA	35/485	167/3619	0.00372915968879468	0.0143429218799795	0.00996455625345946	ANXA2/GPC1/CAVIN1/SLC25A1/PPP1R15A/ALDOC/PIM1/KLF6/CDKN1A/SLC2A3/BHLHE40/S100A4/SDC4/CDKN1C/DDIT3/CAVIN3/ENO1/SERPINE1/PLIN2/NDRG1/ADORA2B/TPST2/HS3ST1/DPYSL4/AKAP12/KDELR3/MAFF/HK1/MYH9/PFKP/KDM3A/WSB1/IER3/SCARB1/PYGM	35
+HALLMARK_P53_PATHWAY	HALLMARK_P53_PATHWAY	37/485	181/3619	0.00451185643134222	0.0161137729690793	0.0111948317469393	VWA5A/S100A10/TM4SF1/TXNIP/PPP1R15A/DGKA/CDKN1A/MDM2/SPHK1/S100A4/LIF/UPP1/ABHD4/DDIT3/RPS27L/TSPYL2/PLK3/STOM/PTPRE/ZBTB16/MXD1/PLXNB2/BAIAP2/XPC/PVT1/VDR/RALGDS/DDB2/TGFB1/NDRG1/PDGFA/ST14/CTSF/CCND3/PCNA/KLF4/IER3	37
+HALLMARK_ESTROGEN_RESPONSE_LATE	HALLMARK_ESTROGEN_RESPONSE_LATE	32/485	155/3619	0.00690125807123546	0.0230041935707849	0.0159818607965453	FDFT1/CD9/DHCR7/EGR3/ID2/CD44/MDK/CCNA1/PRSS23/ABHD2/PTPN6/KCNK5/TPSAB1/NAB2/NRIP1/CDC6/CCND1/DHRS2/GINS2/SLC24A3/KRT19/RET/DLG5/PLXNB1/ST14/BAG1/XRCC3/ELOVL5/CISH/LLGL2/KLF4/SCARB1	32

paper_data/HSPC_LNPsRNA-HSPC_electroRNP-enr-h.all.v7.2.symbols-pos.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_HEME_METABOLISM	HALLMARK_HEME_METABOLISM	52/562	187/3619	7.50616949727036e-06	0.000375308474863518	0.000323950473040089	CTSB/ALAD/TENT5C/NNT/EPOR/KLF1/TFRC/LAMP2/ACP5/KLF3/TRIM58/BNIP3L/MARCHF8/GYPC/FECH/ALAS2/AHSP/SLC7A11/BLVRB/HEBP1/GYPE/IGSF3/SLC25A38/SEC14L1/FOXO3/SIDT2/TFDP2/BCAM/SELENBP1/ALDH6A1/CLCN3/CPOX/TOP1/GCLC/ABCG2/SLC2A1/BLVRA/CLIC2/DCAF10/PICALM/TMCC2/H4C3/XPO7/FN3K/SLC11A2/SLC66A2/TAL1/NFE2/HTRA2/MFHAS1/SLC6A9/MARCHF2	52
+HALLMARK_INTERFERON_ALPHA_RESPONSE	HALLMARK_INTERFERON_ALPHA_RESPONSE	29/562	93/3619	9.47028081952087e-05	0.00236757020488022	0.00204358691368608	SELL/PSMB9/B2M/TENT5A/EPSTI1/TAP1/SAMD9L/IFIT2/BST2/PSME1/TRIM26/HLA-C/IFIH1/SP110/UBE2L6/PSMB8/DDX60/IL7/CMPK2/EIF2AK2/PARP9/PROCR/CASP1/IFIT3/LPAR6/LAMP3/TRIM14/RIPK2/MX1	29
+HALLMARK_INTERFERON_GAMMA_RESPONSE	HALLMARK_INTERFERON_GAMMA_RESPONSE	47/562	183/3619	0.000182878622718431	0.00304797704530719	0.00263088544963357	CSF2RB/PSMB9/APOL6/B2M/CD38/EPSTI1/TAP1/HLA-A/TNFSF10/TNFAIP2/ITGB7/SERPING1/SELP/OAS2/OAS3/SAMD9L/IFIT2/CASP7/ICAM1/BST2/PSME1/TRIM26/HLA-B/IFIH1/SP110/AUTS2/IFIT1/UBE2L6/ISOC1/PSMB8/DDX60/IL7/CMPK2/VAMP8/EIF2AK2/GZMA/ST3GAL5/BANK1/CFH/CASP1/IFIT3/STAT4/TRIM14/RIPK2/IRF5/MX1/CASP4	47
+HALLMARK_GLYCOLYSIS	HALLMARK_GLYCOLYSIS	43/562	172/3619	0.000642828792818113	0.00803535991022641	0.00693578434356385	COL5A1/CXCR4/CHST2/RRAGD/PYGL/HK2/FKBP4/ALDH7A1/TALDO1/GUSB/B4GALT1/PAM/EXT2/GLRX/ERO1A/PLOD2/AGL/STC2/BIK/PKP2/GCLC/PLOD1/MERTK/P4HA1/LHPP/LDHA/GALK2/HS2ST1/ME2/MDH2/HAX1/CENPA/SAP30/GOT2/FUT8/DEPDC1/B4GALT4/FAM162A/RPE/GLCE/ALDH9A1/PGK1/VLDLR	43

paper_data/HSPC_LNPsRNA-HSPC_emptyLNPs-enr-h.all.v7.2.symbols-neg.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count

paper_data/HSPC_LNPsRNA-HSPC_emptyLNPs-enr-h.all.v7.2.symbols-pos.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_P53_PATHWAY	HALLMARK_P53_PATHWAY	32/82	180/3589	1.17667615902607e-21	4.9420398679095e-20	4.21126204283015e-20	PHLDA3/CDKN1A/ZMAT3/FDXR/DDB2/AEN/RPS27L/MDM2/BAX/XPC/SESN1/BTG2/POLH/PLXNB2/GADD45A/IER5/CYFIP2/TRIAP1/PLK2/DRAM1/PPM1D/FAS/TM7SF3/EPHA2/PLK3/TNFSF9/SDC1/CCNG1/RETSAT/RNF19B/PRKAB1/TPRKB	32
+HALLMARK_G2M_CHECKPOINT	HALLMARK_G2M_CHECKPOINT	14/82	197/3589	0.000113483547035889	0.00238315448775367	0.00203075821011591	UBE2C/TOP2A/KPNA2/BUB1/AURKA/NEK2/CCNB2/HMMR/KIF2C/KIF20B/SMC4/CKS1B/SFPQ/TPX2	14
+HALLMARK_APOPTOSIS	HALLMARK_APOPTOSIS	11/82	145/3589	0.000378646878867755	0.00520840457313233	0.00443823948587718	CDKN1A/FDXR/BAX/BTG2/CD38/GADD45A/FAS/TOP2A/CCNA1/RETSAT/CD44	11
+HALLMARK_E2F_TARGETS	HALLMARK_E2F_TARGETS	13/82	200/3589	0.000496038530774508	0.00520840457313233	0.00443823948587718	CDKN1A/PPM1D/TOP2A/DEPDC1/KPNA2/AURKA/CCNB2/HMMR/KIF2C/SMC4/BUB1B/TUBB/CKS1B	13

paper_data/HSPC_UTelectro-HSPC_UT-enr-h.all.v7.2.symbols-neg.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_E2F_TARGETS	HALLMARK_E2F_TARGETS	94/628	200/3619	1.14415593949625e-23	5.72077969748125e-22	4.93793615993118e-22	LBR/TOP2A/BIRC5/H2AZ1/ESPL1/CENPM/DLGAP5/HMGB3/SPC24/STMN1/NCAPD2/KIF22/LMNB1/CIT/HMGB2/SPAG5/TCF19/CDCA8/CDCA3/SMC4/SSRP1/TACC3/ASF1B/MXD3/TIMELESS/CDKN2C/CCNB2/H2AX/DDX39A/AURKA/KIF4A/BUB1B/POLD1/CDC20/CDC25B/MCM3/PLK1/UBE2S/MYBL2/SHMT1/NAA38/RANBP1/MYC/GINS1/KIF2C/XRCC6/AURKB/CENPE/KIF18B/ANP32E/TBRG4/MCM7/KPNA2/NUP205/HMMR/TFRC/CCP110/RACGAP1/PTTG1/LIG1/RAN/MAD2L1/SPC25/NME1/SUV39H1/TK1/MELK/PRDX4/E2F8/TUBB/JPT1/DUT/TRA2B/POP7/MCM2/CDKN1B/ILF3/SNRPB/WEE1/CDC25A/WDR90/SMC1A/RAD51AP1/DEPDC1/UNG/HNRNPD/RFC2/LYAR/CNOT9/CDKN3/MKI67/TMPO/POLE4/EED	94
+HALLMARK_G2M_CHECKPOINT	HALLMARK_G2M_CHECKPOINT	79/628	197/3619	6.05671314925589e-15	1.51417828731397e-13	1.30697494273417e-13	LBR/TPX2/TOP2A/MARCKS/BIRC5/H2AZ1/ESPL1/HMGB3/STMN1/CCNF/KIF22/LMNB1/H2AZ2/SFPQ/TFDP1/SMC4/TACC3/DTYMK/TROAP/CDKN2C/CCNB2/H2AX/KIF23/KIF11/DDX39A/CENPF/AURKA/KIF4A/CDC20/CDC25B/BUB1/INCENP/MCM3/PLK1/UBE2S/MYBL2/MYC/KIF2C/RAD54L/AURKB/CENPE/CENPA/CCNA2/KPNA2/HMMR/RACGAP1/PTTG1/NUP50/KMT5A/KIF15/TTK/MAD2L1/NSD2/AMD1/UBE2C/E2F2/SUV39H1/NDC80/HMGN2/UCK2/JPT1/TRA2B/ODF2/MCM2/CDKN1B/ILF3/DBF4/PBK/CDC25A/NEK2/TOP1/SMC1A/KPNB1/HNRNPD/E2F4/CDKN3/MKI67/TMPO/PML	79
+HALLMARK_MTORC1_SIGNALING	HALLMARK_MTORC1_SIGNALING	54/628	196/3619	0.000170187120256483	0.00283645200427471	0.00244830594053186	CXCR4/PHGDH/CALR/CCNF/PGM1/PGK1/ELOVL6/CORO1A/HSPA5/ITGB2/DDX39A/AURKA/PPA1/SLC37A4/TUBA4A/BUB1/PLK1/IDH1/DHFR/GPI/SDF2L1/ADD3/NUP205/RPN1/TFRC/SLC1A4/TPI1/ATP5MC1/TXNRD1/TOMM40/PFKL/TES/PSMB5/HSP90B1/DHCR24/SHMT2/NIBAN1/PIK3R3/GBE1/INSIG1/MCM2/GLA/CDC25A/CTSC/PRDX1/PPIA/G6PD/SLC9A3R1/GSR/SCD/UNG/EBP/LGMN/LDHA	54
+HALLMARK_MYC_TARGETS_V1	HALLMARK_MYC_TARGETS_V1	51/628	200/3619	0.00181352862240902	0.0226691077801128	0.0195670193470447	H2AZ1/HNRNPA2B1/GOT2/TUFM/PGK1/TFDP1/PPM1G/POLE3/CDC20/RUVBL2/PSMA7/RANBP1/MYC/XRCC6/CDK2/C1QBP/MCM7/CCNA2/KPNA2/SNRPA/HDGF/TXNL4A/STARD7/RAN/MAD2L1/PSMB3/TYMS/NME1/RRM1/MRPL23/HNRNPA3/PRDX4/NHP2/CYC1/PHB/DUT/TRA2B/MCM2/SRSF7/CCT5/ILF2/PPIA/RPS5/KPNB1/SRPK1/HNRNPD/PABPC4/SNRPD2/YWHAQ/LDHA/SNRPA1	51
+HALLMARK_ADIPOGENESIS	HALLMARK_ADIPOGENESIS	45/628	179/3619	0.00445492703086528	0.0373212072083484	0.0322140946429955	TALDO1/TST/PGM1/PTGER3/ELOVL6/AIFM1/CDKN2C/HADH/UQCRC1/IDH1/MDH2/APOE/CPT2/RTN3/VEGFB/ACADS/AGPAT3/SLC25A10/CAT/SLC19A1/MYLK/PFKL/ITSN1/ECHS1/PREB/GHITM/NDUFS3/UCK1/CYC1/GBE1/DHRS7/DLAT/ATP1B3/COQ3/UQCRQ/COX8A/SLC5A6/FAH/TKT/ECH1/NDUFB7/PDCD4/COQ9/ACO2/CS	45
+HALLMARK_OXIDATIVE_PHOSPHORYLATION	HALLMARK_OXIDATIVE_PHOSPHORYLATION	49/628	199/3619	0.00476367136442308	0.0373212072083484	0.0322140946429955	IDH2/GOT2/NNT/SLC25A5/AIFM1/UQCRC1/HADHA/MRPS15/NDUFV1/MRPL11/ACAA1/NDUFA2/IDH1/GPI/OAT/MDH2/IDH3B/PMPCA/ETFA/ACAT1/ETFDH/POLR2F/ATP5MC1/TIMM13/NDUFS7/ECHS1/NDUFS8/ATP5F1A/NDUFS3/TIMM50/MPC1/CYC1/COX7C/DLAT/UQCRQ/COX8A/ECI1/ACADSB/ATP5F1B/ATP5MC3/ECH1/NDUFB7/ALDH6A1/MRPS12/FDX1/TIMM10/LDHA/ACO2/CS	49
+HALLMARK_MITOTIC_SPINDLE	HALLMARK_MITOTIC_SPINDLE	48/628	195/3619	0.00522496900916878	0.0373212072083484	0.0322140946429955	TPX2/TOP2A/MARCKS/BIRC5/ESPL1/DLGAP5/KIF22/LMNB1/MID1IP1/SMC4/EPB41/CCNB2/KIF23/KIF11/CENPF/AURKA/KIF4A/TUBA4A/PREX1/BUB1/INCENP/PIF1/PLK1/SAC3D1/KIF2C/KPTN/ALS2/SUN2/CENPE/KATNB1/RACGAP1/KIF15/TTK/CDK5RAP2/GEMIN4/CKAP5/ITSN1/NDC80/CNTROB/ANLN/RALBP1/ECT2/RASA2/HDAC6/NEK2/SMC1A/ARHGAP4/EPB41L2	48

paper_data/HSPC_UTelectro-HSPC_UT-enr-h.all.v7.2.symbols-pos.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION	54/476	147/3619	1.01756398926306e-13	4.98606354738898e-12	3.10624796722407e-12	VIM/ECM1/LGALS1/CD44/TIMP3/MMP14/ID2/ELN/THBS1/LRP1/TIMP1/JUN/ITGB5/CXCL8/DAB2/ITGB3/SDC4/SPP1/TPM4/PMP22/SFRP4/SERPINE1/INHBA/PRSS2/GADD45A/CAPG/ACTA2/SCG2/GPC1/TNFRSF12A/FLNA/SDC1/NT5E/SPARC/RHOB/GEM/PDLIM4/GJA1/EMP3/VEGFA/ENO2/PMEPA1/VCAN/TGFB1/COL7A1/LAMA3/PDGFRB/CTHRC1/MMP2/HTRA1/ITGA5/TNFAIP3/COL6A2/SLC6A8	54
+HALLMARK_TNFA_SIGNALING_VIA_NFKB	HALLMARK_TNFA_SIGNALING_VIA_NFKB	59/476	179/3619	1.61042258484281e-12	3.94553533286487e-11	2.4580134189706e-11	CDKN1A/CSF1/PPP1R15A/NR4A1/CD44/SLC2A3/LAMB3/EGR3/ID2/SQSTM1/LIF/JUN/PHLDA2/SPHK1/PTGS2/RELB/SDC4/CCL5/NR4A2/SERPINE1/TRAF1/INHBA/PTGER4/FOSL1/BHLHE40/CCND1/TRIP10/SOCS3/GADD45A/MAFF/ABCA1/KLF6/BTG2/RHOB/CCL2/STAT5A/NR4A3/GEM/DUSP5/NFKB2/JAG1/SMAD3/ATF3/LDLR/VEGFA/NFAT5/EGR2/CXCL3/PMEPA1/IER5/CD69/ATP2B1/ETS2/ZFP36/KLF10/TGIF1/TNFAIP3/PHLDA1/SOD2	59
+HALLMARK_INFLAMMATORY_RESPONSE	HALLMARK_INFLAMMATORY_RESPONSE	47/476	146/3619	9.0158533982279e-10	1.47258938837722e-08	9.17402626486347e-09	CDKN1A/CSF1/STAB1/MMP14/AHR/IL4R/LIF/TIMP1/AXL/CD55/SPHK1/CXCL8/SEMA4D/RGS1/IL18R1/ITGB3/CCL5/IL10RA/SCN1B/SERPINE1/INHBA/PTGER4/C5AR1/ABCA1/ADORA2B/LYN/KLF6/EREG/BTG2/CCL2/PTGIR/LDLR/EMP3/C3AR1/LCP2/CD69/ATP2B1/CCR7/P2RX7/GPR132/HIF1A/CD70/ITGA5/P2RX4/GABBR1/CD40/SCARF1	47
+HALLMARK_IL2_STAT5_SIGNALING	HALLMARK_IL2_STAT5_SIGNALING	50/476	175/3619	2.41388968589722e-08	2.95701486522409e-07	1.8421789708163e-07	PLEC/NCS1/ECM1/IL1RL1/CSF1/CD44/SLC2A3/AHR/IL4R/HOPX/PLIN2/EMP1/TNFRSF18/LIF/AHNAK/CDKN1C/PIM1/MYO1C/CDCP1/IL18R1/SPP1/ANXA4/IL10RA/IL2RA/TNFRSF4/TRAF1/BHLHE40/CAPG/MAFF/KLF6/CKAP4/NT5E/RHOB/NCOA3/NRP1/CYFIP1/BATF3/GSTO1/HUWE1/NFKBIZ/CA2/BMPR2/NDRG1/SOCS1/CAPN3/MYO1E/PHLDA1/F2RL2/P2RX4/GUCY1B1	50
+HALLMARK_P53_PATHWAY	HALLMARK_P53_PATHWAY	48/476	181/3619	5.77260536896805e-07	5.65715326158869e-06	3.5243274884226e-06	VWA5A/S100A10/CDKN1A/PPP1R15A/TM4SF1/PHLDA3/LIF/DDIT4/JUN/SPHK1/MDM2/DDIT3/DGKA/XPC/PDGFA/RPS27L/S100A4/TSPYL2/ABHD4/GADD45A/UPP1/VDR/EPHA2/ZBTB16/SLC3A2/STOM/ZMAT3/AEN/SDC1/FDXR/BTG2/DDB2/PTPN14/PITPNC1/PLK3/ATF3/PLXNB2/IER5/HMOX1/TGFB1/ITGB4/PVT1/NDRG1/CDKN2A/SOCS1/ST14/CTSF/TXNIP	48
+HALLMARK_COAGULATION	HALLMARK_COAGULATION	29/476	90/3619	1.72090411137264e-06	1.40540502428766e-05	8.75547705786081e-06	CD9/CAPN2/GSN/TIMP3/PROS1/VWF/MMP14/THBS1/PRSS23/LRP1/TIMP1/ANXA1/ITGB3/CRIP2/DUSP6/SERPINE1/CLU/RAPGEF3/MAFF/SPARC/MMP7/CTSH/DUSP14/WDR1/MMP2/HTRA1/C3/F2RL2/CTSO	29
+HALLMARK_APOPTOSIS	HALLMARK_APOPTOSIS	39/476	145/3619	4.86110579568721e-06	3.40277405698105e-05	2.11988072293126e-05	CDKN1A/GSN/CD44/LMNA/TIMP3/EGR3/BMF/EMP1/SQSTM1/TIMP1/JUN/CCNA1/ANXA1/GPX1/DDIT3/PTK2/CLU/CCND1/H1-0/GADD45A/KRT18/TNFRSF12A/EREG/FDXR/BTG2/RHOB/ISG20/ATF3/ENO2/SLC20A1/HMOX1/CASP8/CD69/PDGFRB/MMP2/HGF/AVPR1A/SOD2/TXNIP	39
+HALLMARK_KRAS_SIGNALING_UP	HALLMARK_KRAS_SIGNALING_UP	37/476	140/3619	1.33324123203971e-05	8.1661025462432e-05	5.08736785909888e-05	VWA5A/PPP1R15A/ACE/ID2/EMP1/LAT2/LIF/LAPTM5/PTGS2/ST6GAL1/GUCY1A1/SPP1/PCSK1N/DUSP6/IL10RA/ADAM8/SCN1B/TRAF1/INHBA/TMEM158/EREG/TFPI/NRP1/F13A1/CCSER2/C3AR1/DNMBP/WNT7A/USP12/KCNN4/AKAP12/CA2/MYCN/PPBP/TNFAIP3/ADGRA2/GNG11	37
+HALLMARK_HYPOXIA	HALLMARK_HYPOXIA	41/476	167/3619	3.12755038533088e-05	0.000170277743201348	0.000106080656344556	ANXA2/CDKN1A/PPP1R15A/SLC2A3/CAVIN1/PLIN2/DDIT4/JUN/CDKN1C/PIM1/DDIT3/SDC4/HS3ST1/SERPINE1/BHLHE40/S100A4/CAVIN3/TPST2/MAFF/GPC1/ADORA2B/KLF6/ISG20/P4HA2/LXN/ATF3/HK1/VEGFA/MXI1/PFKP/ENO2/CHST3/HMOX1/PRKCA/AKAP12/MYH9/NDRG1/ZFP36/IDS/TNFAIP3/KDM3A	41
+HALLMARK_UV_RESPONSE_DN	HALLMARK_UV_RESPONSE_DN	32/476	124/3619	8.59290198653054e-05	0.000421052197339997	0.000262309639588827	ANXA2/DLC1/FHL2/PTPRM/DAB2/CELF2/ITGB3/PMP22/ANXA4/SERPINE1/BHLHE40/SYNJ2/MAP1B/TGFBR2/ADORA2B/SLC22A18/TFPI/MGLL/NRP1/ZMIZ1/SMAD3/NEK7/GJA1/LDLR/MAGI2/RBPMS/ATXN1/PRKCA/ATP2B1/PDGFRB/AKT3/CDC42BPA	32
+HALLMARK_IL6_JAK_STAT3_SIGNALING	HALLMARK_IL6_JAK_STAT3_SIGNALING	19/476	67/3619	0.00069003907615012	0.00307381043012326	0.00191494097687593	CD9/CSF1/CD36/CD44/IL4R/JUN/PIM1/IL18R1/ITGB3/STAT3/IL2RA/SOCS3/LEPR/TNFRSF12A/PTPN11/CXCL3/HMOX1/TGFB1/SOCS1	19
+HALLMARK_TGF_BETA_SIGNALING	HALLMARK_TGF_BETA_SIGNALING	15/476	51/3619	0.00166683284665336	0.00680623412383456	0.00424018882043399	PPP1R15A/ID2/THBS1/CDKN1C/SKIL/SERPINE1/RAB31/SMAD3/NOG/SLC20A1/PMEPA1/TGFB1/BMPR2/KLF10/TGIF1	15
+HALLMARK_ALLOGRAFT_REJECTION	HALLMARK_ALLOGRAFT_REJECTION	34/476	161/3619	0.00272857020457278	0.010284610771082	0.00640716890142596	CSF1/GBP2/STAB1/IL4R/LIF/TIMP1/GZMB/CCL5/PTPN6/IL2RA/INHBA/CXCR3/CAPG/FLNA/LYN/FGR/HLA-E/EREG/CCL2/HLA-DOA/KRT1/PTPRC/GALNT1/TGFB1/LCP2/ELF4/TLR6/CDKN2A/EIF3D/SOCS1/HIF1A/CD4/CD40/HCLS1	34
+HALLMARK_ANGIOGENESIS	HALLMARK_ANGIOGENESIS	9/476	26/3619	0.00429468168935447	0.0150313859127406	0.00936434353317892	TIMP1/PTK2/SPP1/PDGFA/S100A4/NRP1/JAG1/VEGFA/VCAN	9
+HALLMARK_HEDGEHOG_SIGNALING	HALLMARK_HEDGEHOG_SIGNALING	9/476	27/3619	0.00570893779976947	0.0186491968125803	0.0116181892065484	HEY1/CELSR1/SCG2/RASA1/NRP2/NRP1/VEGFA/MYH9/ETS2	9
+HALLMARK_MYOGENESIS	HALLMARK_MYOGENESIS	29/476	139/3619	0.00655897080452823	0.0200868480888677	0.0125138258770604	CDKN1A/CD36/GSN/PTP4A3/LPIN1/KIFC3/SPHK1/ITGB5/HDAC5/MYO1C/CAMK2B/CLU/ABLIM1/BHLHE40/SPARC/MEF2A/PTGIS/ITGA7/PLXNB2/TGFB1/ITGB4/AEBP1/DMPK/MYH3/CACNA1H/MYH9/COL6A2/SLC6A8/MEF2D	29
+HALLMARK_ESTROGEN_RESPONSE_EARLY	HALLMARK_ESTROGEN_RESPONSE_EARLY	32/476	161/3619	0.00931106713470552	0.026350143716326	0.0164157715955629	DLC1/CD44/EGR3/PRSS23/ENDOD1/ABHD2/FHL2/KRT8/NRIP1/MAST4/AQP3/RPS6KA2/ABLIM1/TMEM164/BHLHE40/CCND1/CELSR1/RAB31/DHRS2/KRT18/ELF1/MED13L/SLC24A3/GJA1/TTC39A/AR/FLNB/RET/SLC27A2/KCNK5/KLF10/CLDN7	32
+HALLMARK_APICAL_JUNCTION	HALLMARK_APICAL_JUNCTION	30/476	149/3619	0.00967964463048709	0.026350143716326	0.0164157715955629	ITGA3/CD34/CD276/LAMB3/VWF/VCL/MDK/GNAI1/PTK2/ICAM5/TRAF1/RASA1/CAP1/ACTG1/RRAS/FLNC/THBS3/ZYX/PTPRC/CTNNA1/VCAN/ITGB4/LAMA3/MMP2/PLCG1/SRC/MYH9/ITGA9/AKT3/CLDN7	30

paper_data/HSPC_electroRNA-HSPC_UT-enr-h.all.v7.2.symbols-neg.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_E2F_TARGETS	HALLMARK_E2F_TARGETS	95/742	200/3686	2.68571394430656e-19	1.34285697215328e-17	1.07428557772262e-17	LBR/H2AZ1/TCF19/UNG/STMN1/DLGAP5/ESPL1/SSRP1/SPC24/MYBL2/ASF1B/CENPM/MCM3/RANBP1/LMNB1/NAA38/UBE2S/ANP32E/GINS1/BIRC5/CDCA3/DDX39A/HMGB3/XRCC6/CDKN2C/SHMT1/MYC/TFRC/KIF22/MCM4/CCNE1/MXD3/TIMELESS/TBRG4/PRPS1/CENPE/POP7/EZH2/PRDX4/MCM7/MELK/RBBP7/RAN/POLD1/NOLC1/E2F8/DUT/RRM2/H2AX/SMC6/HNRNPD/TK1/NOP56/SPAG5/MSH2/NUP205/HMGB2/MCM2/SNRPB/LYAR/POLD3/AURKB/CDKN1B/CDK4/AK2/CCP110/RFC2/NME1/NASP/SPC25/CTCF/ILF3/TRA2B/MAD2L1/CNOT9/POLE4/HELLS/SMC1A/KIF4A/CDCA8/DCLRE1B/BUB1B/DCTPP1/CDC25A/UBE2T/UBR7/SUV39H1/PRIM2/KIF18B/WDR90/TMPO/DONSON/SRSF2/RAD51AP1/PHF5A	95
+HALLMARK_OXIDATIVE_PHOSPHORYLATION	HALLMARK_OXIDATIVE_PHOSPHORYLATION	85/742	199/3686	6.68232719850458e-14	1.67058179962615e-12	1.33646543970092e-12	IDH2/GOT2/SLC25A5/IDH1/MRPS15/PMPCA/UQCRC1/IDH3B/MRPL11/COX11/ATP5MC1/GPI/HADHA/ACAT1/MPC1/AIFM1/TIMM50/OAT/NDUFA3/COX7C/NDUFV1/COX6A1/NDUFS3/LDHA/ATP5F1A/FH/UQCRQ/MDH2/ACAA1/ECHS1/ACADSB/DLAT/PRDX3/NNT/POLR2F/NDUFS8/CS/MRPS22/MRPS12/HSPA9/NDUFA4/NDUFA2/ETFA/ATP1B1/HSD17B10/DLD/NDUFS2/TIMM13/PDHA1/HTRA2/MRPL34/ATP5F1B/ETFDH/NDUFS6/NDUFA6/ALDH6A1/ATP5MC3/ECH1/COX7B/NDUFB7/ACAA2/NDUFAB1/NDUFS7/SUCLG1/ATP5ME/ATP5PD/NDUFB2/TIMM10/COX8A/ATP5F1D/ECI1/CYB5A/CYC1/AFG3L2/DLST/IMMT/UQCRH/VDAC3/COX5B/MRPS11/NDUFA8/NDUFS1/NDUFA1/COX4I1/RHOT2	85
+HALLMARK_MYC_TARGETS_V1	HALLMARK_MYC_TARGETS_V1	70/742	200/3686	3.18939392905253e-07	5.31565654842088e-06	4.2525252387367e-06	H2AZ1/GOT2/TUFM/HNRNPA2B1/TFDP1/PPM1G/RANBP1/POLE3/PSMB3/TXNL4A/PGK1/XRCC6/CDK2/MYC/C1QBP/MCM4/SRSF7/PSMA7/RUVBL2/SNRPA/SNRPA1/PRDX4/MCM7/LDHA/STARD7/KPNB1/RAN/NHP2/NOLC1/CCT5/PRDX3/DUT/FBL/HNRNPD/PPIA/YWHAQ/RRM1/NOP56/PHB/HNRNPC/MCM2/ILF2/PRPF31/SNRPD2/PSMA4/CDK4/DHX15/SNRPG/LSM7/NDUFAB1/NME1/SNRPD3/RPS5/ERH/HNRNPA3/CYC1/PABPC4/TRA2B/MAD2L1/MRPL23/SRPK1/XPOT/EIF3B/VDAC3/HDGF/EEF1B2/AP3S1/PSMB2/YWHAE/SRSF2	70
+HALLMARK_ADIPOGENESIS	HALLMARK_ADIPOGENESIS	61/742	180/3686	6.45649179425095e-06	8.07061474281369e-05	6.45649179425095e-05	TALDO1/PGM1/TST/ELOVL6/RTN3/IDH1/UQCRC1/HADH/APOE/SLC5A6/CDKN2C/SLC25A10/PTGER3/AIFM1/CAT/COX6A1/NDUFS3/COQ3/UCK1/UQCRQ/MDH2/ECHS1/DLAT/PRDX3/ACADS/ATP1B3/SLC1A5/CS/MIGA2/DLD/SAMM50/VEGFB/SOD1/PDCD4/GHITM/AK2/FAH/SLC19A1/ECH1/COX7B/NDUFB7/ACAA2/PPP1R15B/NDUFAB1/SUCLG1/PREB/COX8A/ARL4A/MTCH2/CYC1/CHCHD10/IMMT/ITSN1/CPT2/ESRRA/AGPAT3/SLC25A1/PFKL/COQ9/CRAT/DHRS7	61
+HALLMARK_MTORC1_SIGNALING	HALLMARK_MTORC1_SIGNALING	63/742	196/3686	3.08792816551769e-05	0.000308792816551769	0.000247034253241415	PHGDH/UNG/PGM1/CALR/ELOVL6/SLC37A4/CXCR4/IDH1/ITGB2/PPA1/CTSC/DDX39A/CORO1A/PGK1/HSPA5/TUBA4A/ATP5MC1/SDF2L1/NIBAN1/GPI/TFRC/MCM4/PIK3R3/TPI1/GLA/LDHA/TES/TOMM40/HMBS/ADD3/SHMT2/RRM2/DHFR/TXNRD1/SLC1A5/PPIA/SCD/HSPA9/DHCR24/GLRX/PSMB5/INSIG1/PSME3/NUP205/MCM2/PSMG1/RPN1/PSMA4/CCNF/ERO1A/ARPC5L/GSR/HK2/IMMT/PRDX1/PFKL/CDC25A/LGMN/EBP/PSAT1/SSR1/TMEM97/HSP90B1	63
+HALLMARK_G2M_CHECKPOINT	HALLMARK_G2M_CHECKPOINT	62/742	197/3686	7.2748496198563e-05	0.000606237468321358	0.000484989974657087	LBR/H2AZ1/MARCKS/STMN1/ESPL1/H2AZ2/MYBL2/MCM3/TFDP1/LMNB1/UBE2S/BIRC5/DDX39A/HMGB3/AMD1/CDKN2C/MYC/TPX2/KIF22/SFPQ/FBXO5/UCK2/CENPE/DTYMK/EZH2/KPNB1/HMGN2/NOLC1/CDC7/H2AX/RAD54L/HNRNPD/NCL/MCM2/AURKB/CDKN1B/NUP50/CDK4/E2F2/KIF15/CCNF/CBX1/NASP/CTCF/ILF3/E2F4/TRA2B/ATF5/MAD2L1/NSD2/KIF11/GINS2/E2F1/SMC1A/KIF4A/KIF23/CHMP1A/CDC25A/SUV39H1/PRIM2/TMPO/SRSF2	62
+HALLMARK_HEME_METABOLISM	HALLMARK_HEME_METABOLISM	56/742	187/3686	0.000676277812638628	0.00483055580456163	0.0038644446436493	ALAD/KLF1/TENT5C/EPB41/FECH/PRDX2/TRIM58/TFDP2/AHSP/BLVRB/PC/CTSB/SELENBP1/KEL/BNIP3L/EPOR/ALAS2/TFRC/CAT/NARF/HBB/NFE2/GYPC/PPOX/FN3K/BCAM/SLC25A38/GDE1/HMBS/RNF123/NNT/PIGQ/HBQ1/MARCHF8/KLF3/GLRX5/DCAF11/HTRA2/HEBP1/EPB42/SLC66A2/GYPE/ALDH6A1/E2F2/LAMP2/TAL1/ADD1/EIF2AK1/BPGM/H4C3/TMCC2/ACP5/HDGF/GATA1/BSG/ABCG2	56
+HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY	HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY	18/742	49/3686	0.0049913953053914	0.0311962206586963	0.024956976526957	MPO/PRDX2/MGST1/LSP1/CAT/PRDX4/TXNRD1/HMOX2/GLRX/NDUFS2/SOD1/NDUFA6/CDKN2D/GSR/TXN/PRDX1/PTPA/OXSR1	18
+HALLMARK_FATTY_ACID_METABOLISM	HALLMARK_FATTY_ACID_METABOLISM	40/742	138/3686	0.0072001951608787	0.0400010842271039	0.0320008673816831	ALDH1A1/ALAD/H2AZ1/ACSM3/ACSS1/GLUL/IDH1/HADH/IDH3B/PSME1/HSD17B4/HPGD/ECI2/ALDH9A1/GCDH/BPHL/LDHA/YWHAH/FH/ERP29/MDH2/ACAA1/ECHS1/ACADS/NCAPH2/DHCR24/HSD17B10/DLD/PDHA1/SMS/ETFDH/ECH1/ACAA2/NTHL1/SUCLG1/ECI1/DLST/CPT2/CRYZ/CRAT	40

paper_data/HSPC_electroRNA-HSPC_UT-enr-h.all.v7.2.symbols-pos.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_TNFA_SIGNALING_VIA_NFKB	HALLMARK_TNFA_SIGNALING_VIA_NFKB	70/591	182/3686	4.77644076206463e-14	2.34045597341167e-12	1.5083497143362e-12	CDKN1A/CSF1/CD44/NR4A1/PPP1R15A/GADD45A/SLC2A3/EGR3/IER5/LAMB3/BTG2/ID2/LIF/SQSTM1/JUN/PLK2/PTGS2/PTGER4/PHLDA2/RELB/TRAF1/FOSL1/SDC4/SPHK1/SERPINE1/INHBA/TNFSF9/CCL5/DRAM1/NR4A2/BHLHE40/CCND1/ATF3/RHOB/NFKB2/MAFF/LDLR/TRIP10/DUSP5/NFAT5/ABCA1/RNF19B/PTPRE/CD69/SMAD3/VEGFA/TNFAIP3/STAT5A/TGIF1/MXD1/PMEPA1/CCL2/GEM/PLAU/TNIP1/NR4A3/EGR1/ZFP36/CXCL2/EGR2/KLF6/MCL1/ATP2B1/SOCS3/JUNB/NFKBIA/CFLAR/EIF1/SPSB1/JAG1	70
+HALLMARK_P53_PATHWAY	HALLMARK_P53_PATHWAY	69/591	184/3686	3.19787317061324e-13	7.83478926800243e-12	5.04927342728406e-12	CDKN1A/PHLDA3/MDM2/FDXR/ZMAT3/RPS27L/VWA5A/DDB2/AEN/XPC/PPP1R15A/S100A10/PLXNB2/TM4SF1/GADD45A/BAX/DGKA/POLH/IER5/BTG2/SDC1/SESN1/PLK3/LIF/DDIT4/FAS/TRIAP1/JUN/PLK2/EPHA2/ABHD4/PTPN14/PPM1D/CYFIP2/SPHK1/PDGFA/TNFSF9/DRAM1/STOM/PVT1/ATF3/ZBTB16/ADA/DDIT3/NOTCH1/UPP1/TSPYL2/VDR/CCNG1/RNF19B/PTPRE/TGFB1/HMOX1/S100A4/SLC3A2/MXD1/ST14/ZFP36L1/ISCU/RGS16/EPS8L2/PITPNC1/NOL8/TOB1/CD82/RRAD/ANKRA2/SOCS1/KIF13B	69
+HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION	57/591	150/3686	2.36991514176042e-11	3.87086139820868e-10	2.49464751764254e-10	VIM/ECM1/CD44/MMP14/LGALS1/TIMP3/ACTA2/GADD45A/LRP1/THBS1/SDC1/ID2/ELN/GPC1/FAS/JUN/CXCL8/DAB2/TIMP1/ITGB5/SDC4/SPP1/SERPINE1/INHBA/TPM4/FLNA/ITGB3/CAPG/RHOB/SFRP4/PMP22/PRSS2/GJA1/SCG2/VEGFA/TGFB1/PDLIM4/NT5E/TNFAIP3/TNFRSF12A/PMEPA1/PDGFRB/HTRA1/FMOD/GEM/MMP2/COL6A2/LAMA3/LAMC1/WIPF1/VCAN/ENO2/SLC6A8/DST/SPARC/ITGA2/COL7A1	57
+HALLMARK_INFLAMMATORY_RESPONSE	HALLMARK_INFLAMMATORY_RESPONSE	53/591	155/3686	1.04749718821528e-08	1.28318405556371e-07	8.26971464380481e-08	CDKN1A/CSF1/MMP14/STAB1/IL4R/AHR/BTG2/LIF/CD55/PTGER4/SEMA4D/AXL/RGS1/CXCL8/TIMP1/SPHK1/IL18R1/SERPINE1/INHBA/CD70/TNFSF9/SCN1B/CCL5/IL10RA/ITGB3/C5AR1/LDLR/ABCA1/PTPRE/PTGIR/C3AR1/CD69/P2RX4/EBI3/CCR7/EREG/HIF1A/IL2RB/MXD1/LYN/CCL2/RGS16/KLF6/P2RX7/ADORA2B/GABBR1/ATP2B1/LCP2/NFKBIA/BEST1/CD82/ABI1/SCARF1	53
+HALLMARK_IL2_STAT5_SIGNALING	HALLMARK_IL2_STAT5_SIGNALING	56/591	179/3686	1.37850990185023e-07	1.35093970381322e-06	8.70637832747511e-07	PLEC/NCS1/CSF1/ECM1/CD44/IL1RL1/SLC2A3/IL4R/AHR/LIF/HOPX/PLIN2/EMP1/ANXA4/TNFRSF18/CDKN1C/CDCP1/AHNAK/TRAF1/PIM1/SPP1/IL18R1/IL10RA/BHLHE40/MYO1C/CAPG/RHOB/MAFF/IL2RA/HUWE1/NCOA3/CKAP4/PLSCR1/MYO1E/PLPP1/TNFRSF4/CAPN3/CYFIP1/P2RX4/NT5E/NFKBIZ/BCL2L1/NRP1/IL2RB/MXD1/F2RL2/BATF3/RGS16/KLF6/GUCY1B1/COL6A1/GBP4/PRKCH/SPRY4/SOCS1/BMPR2	56
+HALLMARK_COAGULATION	HALLMARK_COAGULATION	34/591	93/3686	8.86561600670357e-07	7.24025307214125e-06	4.66611368773872e-06	CD9/CAPN2/MMP14/TIMP3/GSN/VWF/PROS1/LRP1/THBS1/PRSS23/TIMP1/SERPINE1/ANXA1/DUSP6/CRIP2/ITGB3/RAPGEF3/MAFF/MMP7/CTSH/WDR1/F2RL2/PF4/C3/HTRA1/MMP2/PLAU/ISCU/CLU/SPARC/A2M/ITGA2/F8/DUSP14	34
+HALLMARK_UV_RESPONSE_DN	HALLMARK_UV_RESPONSE_DN	41/591	127/3686	2.93163687625689e-06	2.05214581337982e-05	1.32254295169484e-05	DLC1/ANXA2/FHL2/ANXA4/PTPRM/DAB2/CELF2/SCHIP1/SERPINE1/BHLHE40/ITGB3/SYNJ2/ZMIZ1/PMP22/LDLR/MAP1B/TGFBR2/SLC22A18/GJA1/SMAD3/TFPI/NRP1/ABCC1/ATXN1/CAV1/PDGFRB/PRKCA/RUNX1/CDC42BPA/LAMC1/MGLL/NEK7/PHF3/RBPMS/NIPBL/ADORA2B/AKT3/ATP2B1/ERBB2/SYNE1/MAGI2	41
+HALLMARK_KRAS_SIGNALING_UP	HALLMARK_KRAS_SIGNALING_UP	42/591	145/3686	4.49457545464877e-05	0.000275292746597237	0.000177417452157188	VWA5A/PPP1R15A/ACE/ID2/LIF/LAPTM5/EMP1/PTGS2/LAT2/TRAF1/SPP1/INHBA/SCN1B/IL10RA/DUSP6/ST6GAL1/CCSER2/PCSK1N/GUCY1A1/TMEM158/ADGRA2/WNT7A/AKAP12/C3AR1/ADAM8/TNFAIP3/TFPI/NRP1/EREG/PRDM1/PLAU/USP12/PPBP/DNMBP/JUP/RGS16/ZNF277/PLEK2/KCNN4/ITGA2/HDAC9/CBL	42
+HALLMARK_APOPTOSIS	HALLMARK_APOPTOSIS	42/591	148/3686	7.60567307805709e-05	0.000414086645360886	0.000266865722037091	CDKN1A/FDXR/LMNA/CD44/TIMP3/GSN/GADD45A/BAX/EGR3/CCNA1/BTG2/BMF/SQSTM1/GPX1/FAS/EMP1/JUN/TIMP1/PTK2/CD38/ANXA1/CCND1/ATF3/DDIT3/RHOB/KRT18/CD69/HMOX1/BCL2L1/TNFRSF12A/EREG/CAV1/PDGFRB/MMP2/SLC20A1/ENO2/CASP8/AVPR1A/CLU/MCL1/ERBB2/CFLAR	42
+HALLMARK_IL6_JAK_STAT3_SIGNALING	HALLMARK_IL6_JAK_STAT3_SIGNALING	24/591	71/3686	0.000156589496491878	0.000767288532810204	0.000494493146816458	CD9/CSF1/CD44/CD36/IL4R/FAS/JUN/PIM1/STAT3/CD38/IL18R1/ITGB3/IL2RA/TGFB1/HMOX1/EBI3/TNFRSF12A/PTPN11/LEPR/PF4/SOCS3/A2M/CBL/SOCS1	24
+HALLMARK_HEDGEHOG_SIGNALING	HALLMARK_HEDGEHOG_SIGNALING	12/591	28/3686	0.000657564199328802	0.00292914961519194	0.00188774411290565	CELSR1/HEY1/NRP2/RASA1/MYH9/SCG2/VEGFA/NRP1/NF1/RTN1/CDK6/OPHN1	12
+HALLMARK_HYPOXIA	HALLMARK_HYPOXIA	43/591	171/3686	0.00112282816871681	0.00458488168892698	0.0029548109703074	CDKN1A/ANXA2/PPP1R15A/CAVIN1/SLC2A3/PLIN2/GPC1/DDIT4/JUN/CDKN1C/TPST2/HS3ST1/PIM1/SDC4/SERPINE1/BHLHE40/ATF3/P4HA2/DDIT3/CAVIN3/MAFF/AKAP12/DPYSL4/PFKP/MYH9/VEGFA/TNFAIP3/HMOX1/PGF/S100A4/CAV1/PRKCA/ZFP36/ENO2/KLF6/BCAN/ADORA2B/HK1/CHST3/STC2/WSB1/KIF5A/LXN	43
+HALLMARK_MYOGENESIS	HALLMARK_MYOGENESIS	37/591	144/3686	0.0016271133707773	0.00613296578216058	0.00395250211524849	CDKN1A/PLXNB2/GSN/CD36/PTP4A3/LPIN1/KIFC3/HDAC5/ITGB5/AGRN/ABLIM1/SCHIP1/SPHK1/BHLHE40/MYO1C/NOTCH1/CAMK2B/MEF2D/PTGIS/ITGA7/MYH9/TGFB1/MEF2A/AEBP1/CKB/COL6A2/GJA5/SLC6A8/CLU/EFS/SPARC/EPHB3/STC2/RIT1/EIF4A2/MAPRE3/MEF2C	37
+HALLMARK_TGF_BETA_SIGNALING	HALLMARK_TGF_BETA_SIGNALING	16/591	52/3686	0.00562991599862585	0.0197047059951905	0.0126990586435169	PPP1R15A/THBS1/ID2/CDKN1C/NOG/SERPINE1/SKIL/RAB31/SMAD3/TGFB1/TGIF1/PMEPA1/SPTBN1/SLC20A1/JUNB/BMPR2	16
+HALLMARK_CHOLESTEROL_HOMEOSTASIS	HALLMARK_CHOLESTEROL_HOMEOSTASIS	19/591	68/3686	0.00850354167194319	0.0268520471527215	0.0173052935463296	CD9/ANTXR2/GNAI1/TP53INP1/ACTG1/ATF3/HMGCS1/LDLR/S100A11/PLSCR1/STARD4/CXCL16/TNFRSF12A/FDFT1/TM7SF2/AVPR1A/CLU/JAG1/HSD17B7	19
+HALLMARK_ANGIOGENESIS	HALLMARK_ANGIOGENESIS	10/591	28/3686	0.00876801539680701	0.0268520471527215	0.0173052935463296	TIMP1/PTK2/SPP1/PDGFA/VEGFA/NRP1/S100A4/PF4/VCAN/JAG1	10
+HALLMARK_ESTROGEN_RESPONSE_EARLY	HALLMARK_ESTROGEN_RESPONSE_EARLY	37/591	164/3686	0.0158652310323544	0.0457291953285509	0.0294710173975624	DLC1/CD44/EGR3/MAST4/PRSS23/FHL2/ABHD2/NRIP1/ENDOD1/ABLIM1/AQP3/KRT8/BHLHE40/CCND1/CELSR1/TMEM164/RPS6KA2/MED13L/RAB31/DHRS2/ELF1/KDM4B/KRT18/GJA1/SLC24A3/FLNB/RET/AR/FDFT1/AFF1/NADSYN1/ESRP2/TTC39A/KCNK5/HR/STC2/TOB1	37

paper_data/HSPC_electroRNA-HSPC_UTelectro-enr-h.all.v7.2.symbols-neg.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count

paper_data/HSPC_electroRNA-HSPC_UTelectro-enr-h.all.v7.2.symbols-pos.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_P53_PATHWAY	HALLMARK_P53_PATHWAY	35/87	180/3589	3.3774859389315e-24	1.41854409435123e-22	1.2087844413018e-22	FDXR/ZMAT3/PHLDA3/MDM2/RPS27L/DDB2/AEN/CDKN1A/BAX/XPC/PLXNB2/POLH/SESN1/IER5/DRAM1/GADD45A/PLK2/FAS/SDC1/DGKA/PLK3/TRIAP1/BTG2/CYFIP2/PPM1D/TM7SF3/TNFSF9/EPHA2/CCNG1/RNF19B/NOTCH1/ADA/PTPN14/PIDD1/PTPRE	35
+HALLMARK_G2M_CHECKPOINT	HALLMARK_G2M_CHECKPOINT	20/87	197/3589	2.19082401163594e-08	4.60073042443547e-07	3.92042191555905e-07	UBE2C/TOP2A/CDC25B/HMMR/KPNA2/TROAP/AURKA/CCNB2/CDC20/KIF2C/NEK2/KIF20B/TPX2/PLK1/TACC3/CENPF/CENPA/SMC4/BUB1/CCNF	20
+HALLMARK_E2F_TARGETS	HALLMARK_E2F_TARGETS	16/87	200/3589	1.6680101080754e-05	0.000233521415130556	0.000198990679559873	CDKN1A/PPM1D/TOP2A/CDC25B/HMMR/KPNA2/AURKA/NCAPD2/CCNB2/CDC20/KIF2C/CIT/DEPDC1/PLK1/TACC3/SMC4	16
+HALLMARK_MITOTIC_SPINDLE	HALLMARK_MITOTIC_SPINDLE	15/87	195/3589	5.0660881102393e-05	0.000531939251575127	0.000453281567758254	TOP2A/ARHGEF3/AURKA/CCNB2/KIF2C/NEK2/KIF20B/TPX2/SUN2/PLK1/CKAP5/CENPF/WASF1/SMC4/BUB1	15
+HALLMARK_APOPTOSIS	HALLMARK_APOPTOSIS	11/87	145/3589	0.000636348368240753	0.00534532629322232	0.00455491463582855	FDXR/CDKN1A/BAX/CD38/GADD45A/FAS/BTG2/TOP2A/CDC25B/GNA15/CCNA1	11

paper_data/HSPC_electroRNA-HSPC_electroRNP-enr-h.all.v7.2.symbols-neg.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count

paper_data/HSPC_electroRNA-HSPC_electroRNP-enr-h.all.v7.2.symbols-pos.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_CHOLESTEROL_HOMEOSTASIS	HALLMARK_CHOLESTEROL_HOMEOSTASIS	3/5	56/2734	7.91215470808751e-05	0.000553850829566125	0.0002498575170975	HMGCS1/LSS/MVD	3
+HALLMARK_MTORC1_SIGNALING	HALLMARK_MTORC1_SIGNALING	3/5	180/2734	0.00254339817245719	0.00890189360360017	0.0040158918512482	PSAT1/HMGCS1/INSIG1	3
+HALLMARK_ANDROGEN_RESPONSE	HALLMARK_ANDROGEN_RESPONSE	2/5	79/2734	0.00779153349485881	0.0181802448213372	0.00820161420511454	HMGCS1/INSIG1	2
+HALLMARK_APICAL_JUNCTION	HALLMARK_APICAL_JUNCTION	2/5	104/2734	0.0132950601987862	0.0232663553478759	0.0104961001569365	INSIG1/MVD	2

paper_data/HSPC_electroRNP-HSPC_UT-enr-h.all.v7.2.symbols-neg.txt

+ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
+HALLMARK_E2F_TARGETS	HALLMARK_E2F_TARGETS	92/649	200/3589	5.64907719636043e-21	2.82453859818022e-19	2.37855881952018e-19	LBR/H2AZ1/TCF19/DLGAP5/ESPL1/LMNB1/STMN1/UBE2S/SSRP1/BIRC5/MYBL2/CENPM/ANP32E/MCM3/ASF1B/TIMELESS/CDKN2C/KIF22/MYC/SPC24/MXD3/SHMT1/UNG/CENPE/RANBP1/CDCA3/NAA38/GINS1/POLD1/HMGB3/HNRNPD/SMC1A/SMC4/CIT/MCM7/HMGB2/PRPS1/TOP2A/TFRC/E2F8/H2AX/NUP205/EZH2/RBBP7/TK1/DDX39A/POP7/NCAPD2/BUB1B/TBRG4/SMC6/KIF4A/CCP110/XRCC6/SPC25/MCM4/MKI67/CCNE1/AURKB/MCM2/SPAG5/MELK/CDCA8/CDKN1B/PRDX4/KIF18B/TRA2B/CTCF/RAN/RACGAP1/NOLC1/USP1/SNRPB/TACC3/CDC25A/DUT/MSH2/LIG1/ILF3/RFC2/LYAR/WEE1/RRM2/POLD3/DNMT1/PSIP1/CDKN3/UBE2T/GSPT1/HELLS/TMPO/DCLRE1B	92
+HALLMARK_G2M_CHECKPOINT	HALLMARK_G2M_CHECKPOINT	67/649	197/3589	2.5589484839547e-08	6.39737120988675e-07	5.38725996622042e-07	LBR/MARCKS/H2AZ1/TPX2/ESPL1/LMNB1/STMN1/UBE2S/BIRC5/MYBL2/H2AZ2/MCM3/CDKN2C/KIF22/MYC/SFPQ/DTYMK/TFDP1/CCNF/CENPE/AMD1/HMGB3/HNRNPD/SMC1A/SMC4/INCENP/TOP2A/HMGN2/H2AX/KIF11/EZH2/E2F2/NUP50/DDX39A/KIF15/CENPF/KIF4A/KIF23/ATF5/MKI67/AURKB/KPNB1/MCM2/CDKN1B/NCL/KMT5A/TRA2B/RAD54L/CTCF/RACGAP1/UCK2/NOLC1/SLC12A2/TACC3/CDC25A/CBX1/HNRNPU/TOP1/ILF3/CHAF1A/NSD2/SQLE/FBXO5/CDKN3/CDC7/GSPT1/TMPO	67
+HALLMARK_MTORC1_SIGNALING	HALLMARK_MTORC1_SIGNALING	64/649	196/3589	3.03193412976452e-07	5.05322354960753e-06	4.25534614703792e-06	PHGDH/PSAT1/ELOVL6/INSIG1/SCD/CALR/PGM1/CXCR4/SLC37A4/IDH1/DHCR24/CORO1A/UNG/CCNF/ITGB2/TMEM97/TUBA4A/PPA1/SLC1A5/ADD3/DHFR/TFRC/GPI/NIBAN1/NUP205/PGK1/DDX39A/PIK3R3/FADS2/TES/SDF2L1/CTSC/SHMT2/MCM4/MCM2/TXNRD1/ATP5MC1/SLC9A3R1/TOMM40/HSPA5/GLRX/SC5D/TPI1/HSPA9/ERO1A/EBP/CDC25A/PSME3/PLOD2/PPIA/SLC1A4/DHCR7/HMBS/SQLE/PFKL/GLA/RRM2/LDHA/GSR/G6PD/RPN1/ACACA/CYB5B/IMMT	64
+HALLMARK_HEME_METABOLISM	HALLMARK_HEME_METABOLISM	53/649	187/3589	0.000264854871893134	0.00331068589866417	0.00278794601992772	ALAD/KLF1/TENT5C/PC/TRIM58/FECH/EPB41/TFDP2/AHSP/EPOR/PRDX2/BLVRB/BCAM/BNIP3L/SELENBP1/ALAS2/KLF3/NNT/KEL/NFE2/TFRC/GYPC/H4C3/GLRX5/NARF/MARCHF8/SLC25A38/RNF123/FN3K/E2F2/GYPE/PIGQ/CTSB/DCAF11/ABCG2/CAT/TAL1/HBQ1/ALDH6A1/PPOX/TOP1/LAMP2/ACP5/SLC66A2/HMBS/GDE1/ADD1/SLC25A37/BPGM/NFE2L1/HEBP1/FBXO9/EIF2AK1	53
+HALLMARK_OXIDATIVE_PHOSPHORYLATION	HALLMARK_OXIDATIVE_PHOSPHORYLATION	53/649	199/3589	0.00134666606237845	0.0134666606237845	0.0113403457884501	IDH2/MRPS15/SLC25A5/GOT2/IDH1/MPC1/COX11/ACADSB/AIFM1/ATP1B1/NNT/NDUFV1/ACAA1/HADHA/GPI/UQCRC1/DLAT/ACAT1/PMPCA/MRPL11/ETFDH/TIMM50/ETFA/CYB5A/ECI1/ATP5MC1/ECH1/NDUFS3/NDUFA3/OAT/TIMM13/FH/UQCRQ/HSPA9/COX6A1/NDUFA2/ALDH6A1/MDH2/POLR2F/IDH3B/CS/ATP5F1A/PRDX3/NDUFS8/LDHA/CYC1/NDUFS7/ECHS1/RHOT2/MRPS12/HSD17B10/IMMT/ATP5MC3	53
+HALLMARK_MYC_TARGETS_V1	HALLMARK_MYC_TARGETS_V1	52/649	200/3589	0.00263951115395349	0.0219959262829458	0.0185228852909017	H2AZ1/HNRNPA2B1/TUFM/GOT2/MYC/PPM1G/TFDP1/RANBP1/POLE3/HNRNPD/MCM7/CDK2/RUVBL2/PGK1/FBL/STARD7/XRCC6/PSMA7/C1QBP/MCM4/RRM1/NHP2/KPNB1/MCM2/HNRNPA3/SNRPA/PSMB3/PRDX4/TXNL4A/TRA2B/RAN/YWHAQ/NOLC1/USP1/PRPF31/CCT5/DHX15/PHB/DUT/SNRPA1/HNRNPU/PPIA/PRDX3/LDHA/PABPC4/CYC1/SET/SERBP1/XPOT/PCBP1/GSPT1/SRSF7	52
+HALLMARK_FATTY_ACID_METABOLISM	HALLMARK_FATTY_ACID_METABOLISM	37/649	134/3589	0.00365430340329994	0.0261021671664281	0.0219807723506763	ALAD/ALDH1A1/H2AZ1/ACSS1/ACSM3/GLUL/IDH1/DHCR24/HADH/ECI2/ACAA1/BPHL/HSD17B4/ALDH9A1/PSME1/ACADS/HPGD/GCDH/ETFDH/ERP29/NCAPH2/CPT2/ACAT2/ECI1/KMT5A/ECH1/FASN/FH/YWHAH/MDH2/IDH3B/LDHA/ECHS1/BCKDHB/HSD17B10/NTHL1/SMS	37
+HALLMARK_ADIPOGENESIS	HALLMARK_ADIPOGENESIS	46/649	178/3589	0.00519207162512459	0.0324504476570287	0.0273266927638136	ELOVL6/TALDO1/TST/PGM1/PTGER3/CDKN2C/IDH1/RTN3/AIFM1/HADH/APOE/SLC1A5/SLC25A10/UQCRC1/ACADS/DLAT/SLC5A6/MYLK/SLC19A1/CPT2/DHRS7/PDCD4/ECH1/NDUFS3/CAT/UCK1/COQ9/CHCHD10/UQCRQ/COX6A1/ITSN1/MDH2/SLC25A1/CS/DHCR7/AGPAT3/PRDX3/PFKL/CYC1/MIGA2/ECHS1/PREB/ESRRA/COQ3/IMMT/ATP1B3	46